BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZA06FM1.SCF screened BAC_end
(1012 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1452 1473 0.0
>3x_Contig1452
Length = 10057
Score = 1473 bits (743), Expect = 0.0
Identities = 823/843 (97%), Gaps = 5/843 (0%)
Strand = Plus / Minus
Query: 86 tcagtctcttcaaaatcttaggtgctaccgttaagggtgctactgtagctcaagctgaag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5543 tcagtctcttcaaaatcttaggtgctaccgttaagggtgctactgtagctcaagctgaag 5484
Query: 146 cctttggcattccaaagtcttctgcctcatacgtataaaatagcaactttgaaggtacca 205
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 5483 cctttggcattccaaagtcttctgcctca-acgtataaaatagcaactttgaaggtacca 5425
Query: 206 ttcaagctaccagaatttgatagatgaggtaaagggccaagaaggtagcttatccctatg 265
||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||
Sbjct: 5424 ttcaagctaccagaaatgattagaagaggtaaagggccaagaaggtagcttatccctatg 5365
Query: 266 atttaagtagaacatgcgtttgtataatacttttttgcaattgatctacacttcttcaga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5364 atttaagtagaacatgcgtttgtataatacttttttgcaattgatctacacttcttcaga 5305
Query: 326 aatctattttactatataaagaaaaagaattattcatctcgtattatcaaccttcatctt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5304 aatctattttactatataaagaaaaagaattattcatctcgtattatcaaccttcatctt 5245
Query: 386 ataatgatcaactaaaagaatacagaaagtgatggtataatcgagaaattagaacttaaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5244 ataatgatcaactaaaagaatacagaaagtgatggtataatcgagaaattagaacttaaa 5185
Query: 446 catcatatatagaacctgtggatatgcaagatgttgggataggtgtcgatctgggatcta 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5184 catcatatatagaacctgtggatatgcaagatgttgggataggtgtcgatctgggatcta 5125
Query: 506 ccgagtttagaataggtatttttgattattatactgatagcctagtcaaggaaacgaaag 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5124 ccgagtttagaataggtatttttgattattatactgatagcctagtcaaggaaacgaaag 5065
Query: 566 aaaaagtcccttattttaggcatggaaatgggatcattacccaatgtacctctgatattt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5064 aaaaagtcccttattttaggcatggaaatgggatcattacccaatgtacctctgatattt 5005
Query: 626 taactgctgtagaaaaagcattcaatactttatatatccaggagtacaacatttgttcat 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5004 taactgctgtagaaaaagcattcaatactttatatatccaggagtacaacatttgttcat 4945
Query: 686 tgggtgtaggagcaacttgttcgatggtggttgggaaacagaaagatgagaacttaattc 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4944 tgggtgtaggagcaacttgttcgatggtggttgggaaacagaaagatgagaacttaattc 4885
Query: 746 cctttcaatttgattcatgacaagaacggtagatatcacgatatcatttttttggatgca 805
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 4884 cc-ttcaatttgattcatgacaagaacggtagatatcacgatatca-ttttttggatgca 4827
Query: 806 ttcagcagctatagaggagaccgaatatctcaacaatatttccagacgaatcattcttag 865
||||||||||||||||||||| |||||||||||||||| || ||||||||||| |||||
Sbjct: 4826 ttcagcagctatagaggagacggaatatctcaacaata-ttacagacgaatcaatcttat 4768
Query: 866 cccccttcggcgggaaatttttccctgtaatgggattcccgaaa-tgtggcacttgaaca 924
|| ||||||||||||||||||||||| ||||| | |||||||| ||| |||||||||||
Sbjct: 4767 gccacttcggcgggaaatttttccctgaaatggcaatcccgaaattgttgcacttgaaca 4708
Query: 925 aat 927
|||
Sbjct: 4707 aat 4705
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8023
Number of Sequences: 1807
Number of extensions: 8023
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 1012
length of database: 10,358,551
effective HSP length: 16
effective length of query: 996
effective length of database: 10,329,639
effective search space: 10288320444
effective search space used: 10288320444
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)