BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZA06RM1.SCF screened BAC_end
(988 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1132 605 e-173
3x_Contig1041 597 e-170
>3x_Contig1132
Length = 4143
Score = 605 bits (305), Expect = e-173
Identities = 419/443 (94%), Gaps = 11/443 (2%)
Strand = Plus / Plus
Query: 477 tcaaagattccatcttgaactttctgacgaagaatgcgatgaatttgtggagaatgtgct 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcaaagattccatcttgaactttctgacgaagaatgcgatgaatttgtggagaatgtgct 60
Query: 537 aatttcaaaatctcttggtagtagatacacgaggctatatgatcactttcaattactcac 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aatttcaaaatctcttggtagtagatacacgaggctatatgatcactttcaattactcac 120
Query: 597 gcagggcatctatagttgagatcaaccaatagtaactaataccaaaatatataccacctt 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gcagggcatctatagttgagatcaaccaatagtaactaataccaaaatatataccacctt 180
Query: 657 actcaaaagatcaatccanaacattacctca-gtaatcatagatatccttgccttgntgc 715
|||||||||||||||||| |||| ||||||| |||||||||||||| ||||||||| |||
Sbjct: 181 actcaaaagatcaatccaaaaca-tacctcaggtaatcatagatatacttgccttgttgc 239
Query: 716 aatgttaccttaccatggagaaatagtttcactaattactttatccattcagatattgtt 775
||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||
Sbjct: 240 aatgttaccttaccatggagaaatagtttcactaattacataatccatcaagatattgtt 299
Query: 776 tgatggatagcatttctattgtgtgtaccagtatcgaaagt-acgtgctaac-atttact 833
||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||
Sbjct: 300 tgatggatagcatttctatgtggtgtaccagtatcgaaagtcacgtgctaacaatttact 359
Query: 834 tcgttttttcgattt-at-atatctcactacgt-acttggctttc-gcat-tcttc-aac 887
|||||| ||||||| || |||||||||||||| ||||||||||| |||| ||||| |||
Sbjct: 360 ccgttttctcgatttcataatatctcactacgtaacttggctttcggcatctcttcaaac 419
Query: 888 cgcgagtg-tactttctgactaa 909
||||||| ||||||||||||||
Sbjct: 420 ggcgagtgttactttctgactaa 442
>3x_Contig1041
Length = 5356
Score = 597 bits (301), Expect = e-170
Identities = 328/337 (97%)
Strand = Plus / Plus
Query: 42 cttattagaccatttttcacgagtatatggagatccaaatggcttcaagttcagacatgc 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4894 cttattagaccatttttcacgagtatatggagatccaaatggcttcaagttcagacatgc 4953
Query: 102 acaagataattttgcttctagtttagccgcgtactccatcatctgctatttgctacgaat 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4954 acaagataattttgcttctagtttagccgcgtactccatcatctgctatttgctacgaat 5013
Query: 162 taaggatagacacaacggtaacatcatgatagataatgagggacatgttgttcacatcga 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5014 taaggatagacacaacggtaacatcatgatagataatgagggacatgttgttcacatcga 5073
Query: 222 ttttggcttcatgttatctaattctcctggctctgtgggatttgaagctgctccgtttaa 281
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 5074 ttttggcttcatgttatctaattaacctggctctgtgggatttgaagctgctccgtttaa 5133
Query: 282 actcacatatgagtacgttgaagttatgggaggatcagaaagtgaaactttcaagaaatt 341
|||||||||||||||||||||||||||||| || ||||| ||||| ||||||||||||||
Sbjct: 5134 actcacatatgagtacgttgaagttatgggcggctcagacagtgacactttcaagaaatt 5193
Query: 342 tgttgaactgtgcaaggctgcgtttaaagcgctaaga 378
||| ||| |||||||||||| ||||||||||||||||
Sbjct: 5194 tgtagaaatgtgcaaggctgagtttaaagcgctaaga 5230
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7066
Number of Sequences: 1807
Number of extensions: 7066
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 2
length of query: 988
length of database: 10,358,551
effective HSP length: 16
effective length of query: 972
effective length of database: 10,329,639
effective search space: 10040409108
effective search space used: 10040409108
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)