BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZA07FM1.SCF screened BAC_end
(1022 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1441 1378 0.0
>3x_Contig1441
Length = 8574
Score = 1378 bits (695), Expect = 0.0
Identities = 806/830 (97%), Gaps = 10/830 (1%)
Strand = Plus / Minus
Query: 89 atcttttctccaagccctctgtcagcaatcacattagcaggcagatctctgaagaaaaca 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6040 atcttttctccaagccctctgtcagcaatcacattagcaggcagatctctgaagaaaaca 5981
Query: 149 cttaataaacctagtatactttgtgtttgttctaggttgtcagatagaatgtacctatca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5980 cttaataaacctagtatactttgtgtttgttctaggttgtcagatagaatgtacctatca 5921
Query: 209 gcagcattaaaaatttcatcaatgactgatgtccttgctgaatctgtaagaaaaggcaga 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5920 gcagcattaaaaatttcatcaatgactgatgtccttgctgaatctgtaagaaaaggcaga 5861
Query: 269 gtttggttatggaccaagttaaacaactcgatatcttcaatagaaatcactataccacaa 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5860 gtttggttatggaccaagttaaacaactcgatatcttcaatagaaatcactataccacaa 5801
Query: 329 cgacataagcattcgacaaaacattgaaagagacttaggtacttatcacccatcaaaaac 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5800 cgacataagcattcgacaaaacattgaaagagacttaggtacttatcacccatcaaaaac 5741
Query: 389 tttgtattccgggtgaagttaacaaacataaattgatgtaatgattccagaatcgcaatc 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5740 tttgtattccgggtgaagttaacaaacataaattgatgtaatgattccagaatcgcaatc 5681
Query: 449 ctacccgccttaaagtttagagaacaaaacaaattaccataaaattcacaagcgacttta 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5680 ctacccgccttaaagtttagagaacaaaacaaattaccataaaattcacaagcgacttta 5621
Query: 509 ggctccatcaagtccacggaaacatagtagcctaatattttagccaacgattctgcgata 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5620 ggctccatcaagtccacggaaacatagtagcctaatattttagccaacgattctgcgata 5561
Query: 569 gcaatcctccatttgggacacttaacgcagacggtcaaaattgaatttatattcgaacgc 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5560 gcaatcctccatttgggacacttaacgcagacggtcaaaattgaatttatattcgaacgc 5501
Query: 629 ataacgtccaagaagtcatttttgtgagctttgac-aaataattggactc-aagtaacca 686
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 5500 ataacgtccaagaagtcatttttgtgagctttgacaaaataattggactcaaagtaacca 5441
Query: 687 gtcaaattctcaacc-aagatgaaac-aaatcagaggggtaatc-actctttcatcagaa 743
||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 5440 gtcaaattctcaaccaaagatgaaacaaaatcagaggggtaatcaactctttcatcagaa 5381
Query: 744 at-tcagaaaat-catcctttaccagtttaaaata-ttctgatgataatgatcatctatc 800
|| ||||||||| ||||||| |||||||| ||||| ||||||||||||||||||||||||
Sbjct: 5380 atatcagaaaatacatccttaaccagttttaaatatttctgatgataatgatcatctatc 5321
Query: 801 gcattggtactggtatacatggatataggtttgaacagcctcatcanaaaattagcat-a 859
|||||| ||||| ||||||||||||||| || |||||||||||||| |||| |||||| |
Sbjct: 5320 gcattgttactgttatacatggatatagtttggaacagcctcatcaaaaaaatagcataa 5261
Query: 860 ttccagttaagtaatttaggttttttttaaacccttcttaagatctttga 909
||| |||||| ||||||| ||||| |||| ||||||||||||||||||
Sbjct: 5260 ttcgagttaaagtatttagg-tttttctaaaaccttcttaagatctttga 5212
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7509
Number of Sequences: 1807
Number of extensions: 7509
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 1022
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1006
effective length of database: 10,329,639
effective search space: 10391616834
effective search space used: 10391616834
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)