BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZA07RM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig459 607 e-173
3x_Contig468 283 3e-76
>3x_Contig459
Length = 1510
Score = 607 bits (306), Expect = e-173
Identities = 398/413 (96%), Gaps = 13/413 (3%)
Strand = Plus / Plus
Query: 309 tcttctttatcatctaaagccagtttatttgcaggagttggagttcgttctcttcgaaat 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcttctttatcatctaaagccagtttatttgcaggagttggagttcgttctcttcgaaat 60
Query: 369 atattccaacctctatgttcattcattgaagacgaacttttagatctgctaaaccccaaa 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atattccaacctctatgttcattcattgaagacgaacttttagatctgctaaaccccaaa 120
Query: 429 atgttgctgaacccgtgaataccatgagaaacgggcttatcagctgtctggttctcataa 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atgttgctgaacccgtgaataccatgagaaacgggcttatcagctgtctggttctcataa 180
Query: 489 tcattatcggaagacgaagtagaattatcttcctttatggagtattcagatagttcaggt 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcattatcggaagacgaagtagaattatcttcctttatggagtattcagatagttcaggt 240
Query: 549 ggtctattcatacggacagtgtgtgaaccttccatcatgatgaatgaatgcctgag-gac 607
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 241 ggtctattcatacggacagtgtgtgaaccttccatcatgatgaatgaatgcctgagcgac 300
Query: 608 tactggttc-aaagcag-accgtagac-aagacc-aattagc-acaagag-cttt-gtgg 660
||||||||| ||||||| ||||||||| |||||| ||||||| ||||||| |||| ||||
Sbjct: 301 tactggttcaaaagcagaaccgtagacaaagaccaaattagcaacaagagtctttggtgg 360
Query: 661 c-accagaacacacgt-agattgtt--cttatatttcc-atccgttagttttt 708
| |||||||||||||| |||||||| |||||| ||| ||||||||||||||
Sbjct: 361 caaccagaacacacgtcagattgtttcattatatatccaatccgttagttttt 413
>3x_Contig468
Length = 2584
Score = 283 bits (143), Expect = 3e-76
Identities = 173/179 (96%), Gaps = 3/179 (1%)
Strand = Plus / Minus
Query: 44 acgcaaagaatccatgtcagtagtatccgagtcactcgtttcaataggatcat-cttttt 102
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 177 acgcaaagaatccatgtcagtagtatccgagtcactcgtttcaataggatcatgcttttt 118
Query: 103 tggtggggctggcactattatcaacaacattttcaaaggaatcttgtaacatcgcttcta 162
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 117 tggtggggctggcactattatcaacaacattt-caaaggaatcttgtaacatcgcttcta 59
Query: 163 acctatcattagctgaaagaagaagtttttcctccggcgaaatagcttcgtcaaaaaga 221
||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||
Sbjct: 58 acctatcattagctgaaagaagaagttatatctccggcgaaatagc-tcgtcaaaaaga 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6940
Number of Sequences: 1807
Number of extensions: 6940
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 2
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)