BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZA08FM1.SCF screened BAC_end
(1059 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1020 975 0.0
>3x_Contig1020
Length = 4879
Score = 975 bits (492), Expect = 0.0
Identities = 550/563 (97%), Gaps = 5/563 (0%)
Strand = Plus / Plus
Query: 85 attagactaattacccactctttaggtggtgaagcttatt-tgaactttg-aaggtaacg 142
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 2528 attagactaattacccactctttaggtggtgaagcttattatgaactttgcaaggtaacg 2587
Query: 143 agtttggtcaccctgaatggttggatttccctaacgttaacaacggcgatagttaccatt 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2588 agtttggtcaccctgaatggttggatttccctaacgttaacaacggcgatagttaccatt 2647
Query: 203 atgctagaaggcagttcaacttggtggatgaccctttgttgagataccaatacttgtatc 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2648 atgctagaaggcagttcaacttggtggatgaccctttgttgagataccaatacttgtatc 2707
Query: 263 agtttgataaggctatgcaaactactgaaaagaattataaatggttgaatacaccacaag 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2708 agtttgataaggctatgcaaactactgaaaagaattataaatggttgaatacaccacaag 2767
Query: 323 cgtatgtctctttgaaacacgaagttgacaaggtcatcgcattcgaaagaaatggactct 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2768 cgtatgtctctttgaaacacgaagttgacaaggtcatcgcattcgaaagaaatggactct 2827
Query: 383 tgttcatcttcaatttccatccgacagaatccttcacagattatcgtattggagttaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2828 tgttcatcttcaatttccatccgacagaatccttcacagattatcgtattggagttaatg 2887
Query: 443 agccaggttgctaccgtatcgtattgaactcagacaagcatgaatacggtggctgggatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2888 agccaggttgctaccgtatcgtattgaactcagacaagcatgaatacggtggctgggatc 2947
Query: 503 gtatcgatgagntccaatccaagta-tttactactgatttgaaatggaacgaaagaaaca 561
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2948 gtatcgatgagtcccaatccaagtattttactactgatttgaaatggaacgaaagaaaca 3007
Query: 562 atttcattcacgttttacttccaaaccgtaccgcatttatttctcgcccttgattcaaga 621
||||||| || |||| ||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 3008 atttcatccaggtttacattccaaaccgtaccgca-ttagttctcgcccttgattcaaga 3066
Query: 622 gtgaggaattggaaattagccaa 644
|||||||| ||||||||||||||
Sbjct: 3067 gtgaggaa-tggaaattagccaa 3088
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,248
Number of Sequences: 1807
Number of extensions: 19248
Number of successful extensions: 2812
Number of sequences better than 1.0e-20: 1
length of query: 1059
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1043
effective length of database: 10,329,639
effective search space: 10773813477
effective search space used: 10773813477
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)