BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZA08RM1.SCF screened BAC_end
(978 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1737 1116 0.0
>3x_Contig1737
Length = 17214
Score = 1116 bits (563), Expect = 0.0
Identities = 660/683 (96%), Gaps = 7/683 (1%)
Strand = Plus / Minus
Query: 47 gctgccaaagtagcgtcaccatccaagtgttggagcaattgtttgtacaacaattgggtc 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7679 gctgccaaagtagcgtcaccatccaagtgttggagcaattgtttgtacaacaattgggtc 7620
Query: 107 cagatagcacctgacacagctgatccaacagctgagccgattctgtacatggtgtaactc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7619 cagatagcacctgacacagctgatccaacagctgagccgattctgtacatggtgtaactc 7560
Query: 167 aatgcggtgacagtggccatgttttcatgagaagtgacggattggagggacacggtgact 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7559 aatgcggtgacagtggccatgttttcatgagaagtgacggattggagggacacggtgact 7500
Query: 227 gggtaagtgaacatggtggtaccgagaccccaaacgactagcgcaccgatgataccttta 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7499 gggtaagtgaacatggtggtaccgagaccccaaacgactagcgcaccgatgataccttta 7440
Query: 287 tcagaattttgaccggatctgaaatggaacaagatacccattgcgaccatccatagggaa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7439 tcagaattttgaccggatctgaaatggaacaagatacccattgcgaccatccatagggaa 7380
Query: 347 caaccagcgatgatgaatggctttaatctggtgaatctagtgatgaatagcgcaaagaaa 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7379 caaccagcgatgatgaatggctttaatctggtgaatctagtgatgaatagcgcaaagaaa 7320
Query: 407 ggcgaaaatacggtggaagtgaaggtactgacactggaaattctggtggcagaagtgaca 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7319 ggcgaaaatacggtggaagtgaaggtactgacactggaaattctggtggcagaagtgaca 7260
Query: 467 cttttattcacagcaaccatcaagattgtgtacaagtaacctgcggccatggtgaagatg 526
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7259 ctttcattcacagcaaccatcaagattgtgtacaagtaacctgcggccatggtgaagatg 7200
Query: 527 aagttgatcaagaagggcattcacaaagcagcccaaata-cacggtctttcaacaacttg 585
|||||||||||||||| || |||||||||||||||||| |||||||| |||||||||||
Sbjct: 7199 aagttgatcaagaaggcaatacacaaagcagcccaaataccacggtctctcaacaacttg 7140
Query: 586 aatggagcaattggtttacgagcccattttggatt-ccatgcgataaag-attggattca 643
|||||||||||||||| ||||||||| |||||||| ||||||||||||| || |||| |
Sbjct: 7139 aatggagcaattggttcacgagccca-tttggattcccatgcgataaagaatgggatcaa 7081
Query: 644 gacg-aaccttagatgaatggagcattgattttgggattgtt-catttgtttgaga-atc 700
|||| ||||| |||||||||||||| |||| | |||||||| ||||||||||||| | |
Sbjct: 7080 gacgaaacctaagatgaatggagcaatgatatgtggattgttccatttgtttgagatacc 7021
Query: 701 acctgctagaatcaatgggacca 723
|||||||||| ||||||||||||
Sbjct: 7020 acctgctagagtcaatgggacca 6998
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7080
Number of Sequences: 1807
Number of extensions: 7080
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 978
length of database: 10,358,551
effective HSP length: 16
effective length of query: 962
effective length of database: 10,329,639
effective search space: 9937112718
effective search space used: 9937112718
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)