BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZA09FM1.SCF screened BAC_end
(1050 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig938 1201 0.0
>3x_Contig938
Length = 2936
Score = 1201 bits (606), Expect = 0.0
Identities = 639/650 (98%)
Strand = Plus / Plus
Query: 89 ttcaacagtaaaacctccagttctcgtgtagctatcgataaactacggcattttttcgcc 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2262 ttcaacagtaaaacctccagttctcgtgtagctatcgataaactacggcattttttcgcc 2321
Query: 149 aagaacggtaaattattcgagagtaagaaatctattaccaaattttcttctgccaataag 208
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 2322 aagaacggtaaattattcgagagtaagaaatctactaccaaattttcttctgccaataag 2381
Query: 209 ctaatacaagtcactaataagaatcgctctgcaaagggagatgattctatccctgtcgca 268
||||||||||||||||| | ||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 2382 ctaatacaagtcactaagatgaagcgcactgcaaagggagatgattctatccctgtcgca 2441
Query: 269 aatagaatatacgcatggtgttacgtggtggcggactcttcggataagaaacccatcgcg 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2442 aatagaatatacgcatggtgttacgtggtggcggactcttcggataagaaacccatcgcg 2501
Query: 329 aatgaagtgttcataaataagatgtggccaattggaagagctttggattccttggcatct 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2502 aatgaagtgttcataaataagatgtggccaattggaagagctttggattccttggcatct 2561
Query: 389 gtgctaaacgtgaaaaattcaaacatcgaccattcgatatcaacagatgagaagttattt 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2562 gtgctaaacgtgaaaaattcaaacatcgaccattcgatatcaacagatgagaagttattt 2621
Query: 449 ttgtacaaaggtgatgcttctactcagcatctattaccctcgagtgcgcgagtcaatgcc 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2622 ttgtacaaaggtgatgcttctactcagcatctattaccctcgagtgcgcgagtcaatgcc 2681
Query: 509 accatccaggaaggtgatactttatatttggtaagagggttaggtcgatgattgcaacgc 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2682 accatccaggaaggtgatactttatatttggtaagagggttaggtcgatgattgcaacgc 2741
Query: 569 cgcgtaatggaatctgaaggataaaatagcacattcttttggtctttacttatagcatag 628
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2742 cgcgtaattggatctgaaggataaaatagcacattcttttggtctttacttatagcatag 2801
Query: 629 ttcatgtagtttcgtaattacgtcttacagtcaaacacaatgacacttgtcacgtgacag 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2802 ttcatgtagtttcgtaattacgtcttacagtcaaacacaatgacacttgtcacgtgacag 2861
Query: 689 attaagttgtcgaaacattactgcatcaagctacagacatggtaccagcc 738
|||| ||||||||||||||||||||||| || ||||||||||||| ||||
Sbjct: 2862 attatgttgtcgaaacattactgcatcatgcaacagacatggtacaagcc 2911
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5793
Number of Sequences: 1807
Number of extensions: 5793
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 1050
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1034
effective length of database: 10,329,639
effective search space: 10680846726
effective search space used: 10680846726
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)