BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZA09RM1.SCF screened BAC_end
(1052 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1190 1148 0.0
>3x_Contig1190
Length = 5329
Score = 1148 bits (579), Expect = 0.0
Identities = 600/607 (98%)
Strand = Plus / Plus
Query: 48 tgaagagttcgacactagaatacttgttaaggttattgaatacatggaatactcgtataa 107
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 4723 tgaagagttcgacactagaatactagataaggttattgaatacatggaatactcgtataa 4782
Query: 108 gtacaaggatgctgatgacgacgttgaagttcctgagttcaacgtttctcctgatatttc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4783 gtacaaggatgctgatgacgacgttgaagttcctgagttcaacgtttctcctgatatttc 4842
Query: 168 gttagatttattattagctgctgattatttgggtatatgatgcgatactaaaggctttat 227
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4843 gttagatttattattagctgctgattatttgggtatatgatgcgatactaaaggctagat 4902
Query: 228 tgaacaaaacacagggttgaaatgtgataatagtcatggcaatttcataaagctcactct 287
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4903 agaacaaaacacagggttgaaatgtgataatagtcatggcaatttcataaagctcactct 4962
Query: 288 ctttgttttcaccttagtcgacatcactggacaataaggacatttgaaattacaagtccc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4963 ctttgttttcaccttagtcgacatcactggacaataaggacatttgaaattacaagtccc 5022
Query: 348 gttcttgcttaatttatccagacttttcttggaaagaacgtgatgacagggcaaagaata 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5023 gttcttgcttaatttatccagacttttcttggaaagaacgtgatgacagggcaaagaata 5082
Query: 408 aggtgggttttccttcgtagtctcttctttcaataccggacatatgaatatagggtgata 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5083 aggtgggttttccttcgtagtctcttctttcaataccggacatatgaatatagggtgata 5142
Query: 468 gttcgacaagaagggtggcagcttgacgtgaaacggtaattcatcagcagtggaccagtc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5143 gttcgacaagaagggtggcagcttgacgtgaaacggtaattcatcagcagtggaccagtc 5202
Query: 528 cacatgagatactttcctaatggcttcatatttagtgaacacttggaaaccgataacccc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5203 cacatgagatactttcctaatggcttcatatttagtgaacacttggaaaccgataacccc 5262
Query: 588 acttagcacgaccaggaataacgctgaatgtaaaggaagtttgttctgtagacaatactg 647
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5263 acttagcacgacaaggaataacgctgaatgtaaaggaagtttgttctgtagacaatactg 5322
Query: 648 gttcgtg 654
||||||
Sbjct: 5323 tttcgtg 5329
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6757
Number of Sequences: 1807
Number of extensions: 6757
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 1052
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1036
effective length of database: 10,329,639
effective search space: 10701506004
effective search space used: 10701506004
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)