BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZA10FM1.SCF screened BAC_end
(970 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1754 898 0.0
>3x_Contig1754
Length = 26052
Score = 898 bits (453), Expect = 0.0
Identities = 565/597 (94%), Gaps = 4/597 (0%)
Strand = Plus / Plus
Query: 87 atccttagatctggtaattacagatctatcattttgatcagatgatcccttatttacatt 146
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21176 atccttagatttggtaattacagatctatcattttgatcagatgatcccttatttacatt 21235
Query: 147 catactcaatgaaagctgctgctttctgcttgctggtatgtcaaatatctgaatctatgg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21236 catactcaatgaaagctgctgctttctgcttgctggtatgtcaaatatctgaatctatgg 21295
Query: 207 ttggttctctctacgtatctatttcaatgtctataaaaaatacctaaatttgaagaagca 266
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 21296 ttgtttctctctacgtatcaatttcaatgtctataaaaaatacctaaatttgaagaagca 21355
Query: 267 ttccatagagtaaaatgagatcgaaaaaaaaagaacggcatgcaacaatcatataactac 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21356 ttccatagagtaaaatgagatcgaaaaaaaaagaacggcatgcaacaatcatataactac 21415
Query: 327 tacaaatgccgagtttattccacaacatcactgaaatattctgaaatatcaaaatcaaca 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21416 tacaaatgccgagtttattccacaacatcactgaaatattctgaaatatcaaaatcaaca 21475
Query: 387 ctgccagccactagtaatatgtaatcccaagtgacgttaactttaaacttaagtctttcg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21476 ctgccagccactagtaatatgtaatcccaagtgacgttaactttaaacttaagtctttcg 21535
Query: 447 tgaagataccccaatttgtgcatgttcagacccggtagaagttgagaagtaatcaaatcg 506
|||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||
Sbjct: 21536 tgaagataccccaatttgtgcatgttcagaccggtaagaagttgagaagtaatcaattcg 21595
Query: 507 gacacgtttttcgtagactttcacatttgctttcatatgaccatttcttt-aaagaaatt 565
|||||| ||||||||||||| ||||||||||||||||||| ||| ||||| ||||||| |
Sbjct: 21596 gacacg-ttttcgtagacttccacatttgctttcatatgaacatctctttgaaagaaa-t 21653
Query: 566 ctggagaccatttctttcaaactttgactgggtatttcgattggaaaattgcccccattt 625
|||||||| ||| ||| ||||| ||||||||||| ||||||||||||||||| ||||
Sbjct: 21654 ctggagacaattccttcgaaactctgactgggtatatcgattggaaaattgccagcattc 21713
Query: 626 tttcaaaaaaaaaacctgatggtttgaaagttttccgggttattcgcttgtttgctt 682
| |||| | |||| |||||||| ||||| || | ||||||||||||| ||||||||
Sbjct: 21714 tctcaagagaaaagcctgatgg-ttgaaggtatctcgggttattcgctggtttgctt 21769
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,588
Number of Sequences: 1807
Number of extensions: 10588
Number of successful extensions: 145
Number of sequences better than 1.0e-20: 1
length of query: 970
length of database: 10,358,551
effective HSP length: 16
effective length of query: 954
effective length of database: 10,329,639
effective search space: 9854475606
effective search space used: 9854475606
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)