BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZA10RM1.SCF screened BAC_end
(1061 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1667 862 0.0
>3x_Contig1667
Length = 12071
Score = 862 bits (435), Expect = 0.0
Identities = 497/511 (97%), Gaps = 5/511 (0%)
Strand = Plus / Minus
Query: 46 cttctgctatatgtatccctgccatgtcactaggagattcgattagtatatctatacctt 105
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 6625 cttctgctatatgtatccctgccatggcactaggagattcgattagtatatctatacctt 6566
Query: 106 gacatccctcccaagctgtatccaacagagatgagatccaagtagaaaagtttgtagaag 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6565 gacatccctcccaagctgtatccaacagagatgagatccaagtagaaaagtttgtagaag 6506
Query: 166 cgtccctcaataaacccatgttcattgatccatgctgtaccatcaaagatattagttctg 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6505 cgtccctcaataaacccatgttcattgatccatgctgtaccatcaaagatattagttctg 6446
Query: 226 tttgattaccagatatttctctaaatcctatattatgagaaactatccaatccttaaatt 285
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6445 caggattaccagatatttctctaaatcctatattatgagaaactatccaatccttaaatt 6386
Query: 286 ctccatgagttagtataataacttcatgaccttcggcttgcaaaccctttgccaatgcaa 345
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 6385 ctccatgagttagtataataacttcatga-cttcggcttgcaaaccctttgccaatgcaa 6327
Query: 346 tatatggttgtacatcacctcttgaaccgattgtaagtaatccgaatttgtagcttttac 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6326 tatatggttgtacatcacctcttgaaccgattgtaagtaatccgaatttgtagcttttac 6267
Query: 406 taggtttgattacagtggtgaaatacgggtttttttcaacgattaatggaatatcaaagc 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6266 taggtttgattacagtggtgaaatacgggtttttttcaacgattaatggaatatcaaagc 6207
Query: 466 cttgttcactaatttttttcttctaattaatctgagactcgcagctttgtgagaggcggt 525
|||||||||||| ||||||||||||| |||| ||||||||||||| || |||||||||||
Sbjct: 6206 cttgttcactaa-ttttttcttctaa-taatttgagactcgcagc-ttctgagaggcggt 6150
Query: 526 ggaccaacttcagctgtagaacttcgtttta 556
|| |||||||||||||||| |||||||||
Sbjct: 6149 -gaacaacttcagctgtagactttcgtttta 6120
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,834
Number of Sequences: 1807
Number of extensions: 13834
Number of successful extensions: 86
Number of sequences better than 1.0e-20: 1
length of query: 1061
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1045
effective length of database: 10,329,639
effective search space: 10794472755
effective search space used: 10794472755
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)