BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZA12RM1.SCF screened BAC_end
(987 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig948 1152 0.0
>3x_Contig948
Length = 3578
Score = 1152 bits (581), Expect = 0.0
Identities = 680/705 (96%), Gaps = 6/705 (0%)
Strand = Plus / Plus
Query: 40 cttcgatactgtttcaatacaaaatctacaaactggatgtatttctggtt-attt-acac 97
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||
Sbjct: 1076 cttcgatactgtttcaatacaaaacctacaaactggatgtatttctggtttatttcacac 1135
Query: 98 gtcctgccggagttctcatatcagatgtggtatagtatcgtgcaattgaaacatagacaa 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1136 gtcctgccggagttctcatatcagatgtggtatagtatcgtgcaattgaaacatagacaa 1195
Query: 158 gatcttgttgaactcatgattaatcggtttgagttcttgaaacttattgcaatgcaacat 217
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1196 gatcttgttgaactcatgattaatcggtttgagttcttgaaacttattgcaatgcaacaa 1255
Query: 218 tttgctcagggtagcaaaaacattgacagaacttgggaatctaaacggatttcatatagc 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1256 tttgctcagggtagcaaaaacattgacagaacttgggaatctaaacggatttcatatagc 1315
Query: 278 catgatcaattggcgtgtttgtttcttgaatcattcaatgccatttcgatggaaaattgg 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1316 catgatcaattggcgtgtttgtttcttgaatcattcaatgccatttcgatggaaaattgg 1375
Query: 338 aacgacgaaattttaagattacagaataggctgt-gggcaaaggttaaggataagtcaat 396
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1376 aacgacgaaattttaagattacagaataggctgtggggcaaaggttaaggataagtcaat 1435
Query: 397 aagagattcaagatctgatgacattttatctattcacgataaagtgtttttgttagcaga 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1436 aagagattcaagatctgatgacattttatctattcacgataaagtgtttttgttagcaga 1495
Query: 457 aacttgtaatcgccagattactcctgccatcgaatggatgatcattaccccttgagatat 516
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 1496 aacttgtaatcgccagattactcctgccatcgaatggatgatcattacccttgaagatat 1555
Query: 517 ttatgccatcaataagaattctatgagtaacgattttaaaggaagctcaactgctgctta 576
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1556 ttatgccatcaataagaattctatgagtaacgattttaaaggaagctcaactgctgctaa 1615
Query: 577 tatacctattctgactaagaactataactgcaattaagaaattttttggcattgattacg 636
||||||||||||||||||||||||||||||||| ||||||||||| || || |||| |||
Sbjct: 1616 tatacctattctgactaagaactataactgcaa-taagaaattttctgccaatgataacg 1674
Query: 637 acgtgcgatctacaattccagtacttttcataaacgcctctgattttcaaacgaatac-t 695
|||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||| |
Sbjct: 1675 acgtgcgatctacaatcccagtactttccattaacgcgtctgattttcaaacgaatacat 1734
Query: 696 tgggcaataatgaccgattgataaaagg-attacagcttgcctga 739
|||||| ||||| ||||||||||| || || |||||||||||||
Sbjct: 1735 tgggcatcaatgagcgattgataaagggtatcacagcttgcctga 1779
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8180
Number of Sequences: 1807
Number of extensions: 8180
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 987
length of database: 10,358,551
effective HSP length: 16
effective length of query: 971
effective length of database: 10,329,639
effective search space: 10030079469
effective search space used: 10030079469
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)