BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZB01FM1.SCF screened BAC_end
(1010 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1344 1023 0.0
>3x_Contig1344
Length = 6608
Score = 1023 bits (516), Expect = 0.0
Identities = 614/639 (96%), Gaps = 6/639 (0%)
Strand = Plus / Plus
Query: 80 aactctcctataagattggttcctgatgagagcaacaaggaaaacgtacacgcattggaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5352 aactctcctataagattggttcctgatgagagcaacaaggaaaacgtacacgcattggaa 5411
Query: 140 agcgatgatcaacagagcgataaggagcagacctacaagagaagtaaaatagagtactca 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5412 agcgatgatcaacagagcgataaggagcagacctacaagagaagtaaaatagagtactca 5471
Query: 200 tccccagaaaagattgagatgcttantt-tttatctcctataaaaatagatatcgaagga 258
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 5472 tccccagaaaagattgagatgcttaatagtttatctcctataaaaatagatatcgaagga 5531
Query: 259 aatgatggaattgagtctgatttgaaaaaatcagtcgccacagccattgaagaagcagtg 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5532 aatgatggaattgagtctgatttgaaaaaatcagtcgccacagccattgaagaagcagtg 5591
Query: 319 caagatttcaaaaaggattcaaaagcggaagaagatgaagaagaggcattcggcaagtta 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5592 caagatttcaaaaaggattcaaaagcggaagaagatgaagaagaggcattcggcaagtta 5651
Query: 379 aataatggatttcgtggttatcatgaatcctccactgcaaacgcttctggatcagctggt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5652 aataatggatttcgtggttatcatgaatcctccactgcaaacgcttctggatcagctggt 5711
Query: 439 tctgatgcaccacaacatgctcactgccatgagtcattgtcaccgataaggtcgtatggt 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5712 tctgatgcaccacaacatgctcactgccatgagtcattgtcaccgataaggtcgtatggt 5771
Query: 499 gataaagagatgcctctcgacccatcagaccccacagtctgggagaagaagtttgatgat 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5772 gataaagagatgcctctcgacccatcagaccccacagtctgggagaagaagtttgatgat 5831
Query: 559 ttatcatccgttatatggggataaatatgaggagattaagtatctcaatgattcctgaca 618
||||||||||| |||| ||||||||||||| ||||||||||||||||||||| | |||
Sbjct: 5832 ttatcatccgtaatat-gggataaatatgaagagattaagtatctcaatgatactgtaca 5890
Query: 619 gaacttacgagaaagaacagttg-agccggattttataaggaga-agac-catttgaact 675
||||||||||||||||||||| | ||| | |||| |||| |||| |||| ||| |||||
Sbjct: 5891 gaacttacgagaaagaacagtagaagcggaatttaataaagagagagacaaattggaact 5950
Query: 676 tattaaatgggagcaaaattatgg-gacgttttatcaaa 713
||| ||||||||||| || ||||| ||||| ||||||||
Sbjct: 5951 tatcaaatgggagcagaaatatggcgacgtattatcaaa 5989
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8331
Number of Sequences: 1807
Number of extensions: 8331
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 1010
length of database: 10,358,551
effective HSP length: 16
effective length of query: 994
effective length of database: 10,329,639
effective search space: 10267661166
effective search space used: 10267661166
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)