BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZB02FM1.SCF screened BAC_end
(1098 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1718 876 0.0
>3x_Contig1718
Length = 19496
Score = 876 bits (442), Expect = 0.0
Identities = 505/520 (97%), Gaps = 5/520 (0%)
Strand = Plus / Plus
Query: 82 ctaggacaacataccgtaaaacatctaatccgaaacgtttttgacagcgcttatttgtca 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9801 ctaggacaacataccgtaaaacatctaatccgaaacgtttttgacagcgcttatttgtca 9860
Query: 142 ttgagtttaagaaaatgaatctaggagatgtgggtaatcgcagaacattactttcttcaa 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9861 ttgagtttaagaaaatgaatctaggagatgtgggtaatcgcagaacattactttcttcaa 9920
Query: 202 taatgctctctacttgcgctcggtcnnttgatggtatccatcttcgtgaatactatttca 261
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 9921 taatgctctctacttgcgccatgtct-ttgatggtatccatcttcgtgaatactatttca 9979
Query: 262 aaaggaattccatcgttaacaagtaaatctatcatctgtgcatcgtattcgctaaatcca 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9980 aaaggaattccatcgttaacaagtaaatctatcatctgtgcatcgtattcgctaaatcca 10039
Query: 322 ttattggcacttattagcaagaaactgcgacgtaactctcttcttttatgcaaataatcc 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10040 ttattggcacttattagcaagaaactgcgacgtaactctcttcttttatgcaaataatcc 10099
Query: 382 atcgtgactttcccttgttccacagttcctttagtaccatatcctgnagtatcaatgatg 441
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 10100 atcgtgactttcccttgttccacagttcctttagtaccatatcctggagtatcaatgatg 10159
Query: 442 cgaaacttcccacctacattgaaacaattgatggtctttgtaaaacctgcctttttggag 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10160 cgaaacttcccacctacattgaaacaattgatggtctttgtaaaacctgcctttttggag 10219
Query: 502 gcatttgcatattcgtttaaactatttccttgtcccctccgtaggggacactgtttaaaa 561
||||||||||||||||||||||||||| |||||| |||||||| | ||||||||||||||
Sbjct: 10220 gcatttgcatattcgtttaaactattt-cttgtcacctccgta-gtgacactgtttaaaa 10277
Query: 562 gagtaaatttcccctggattacatttttcccaaaaacgct 601
||||| |||| ||||| |||||| | ||||||||||||||
Sbjct: 10278 gagtagattt-ccctgaattaca-tcttcccaaaaacgct 10315
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8162
Number of Sequences: 1807
Number of extensions: 8162
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 1098
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1082
effective length of database: 10,329,639
effective search space: 11176669398
effective search space used: 11176669398
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)