BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZB02RM1.SCF screened BAC_end
(1018 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1739 1126 0.0
>3x_Contig1739
Length = 22061
Score = 1126 bits (568), Expect = 0.0
Identities = 639/660 (96%), Gaps = 2/660 (0%)
Strand = Plus / Plus
Query: 41 aaagcctgtatgaaagttgcgaagctccatataagagaagtttgtaataatcatagaatc 100
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 10320 aaagcttgtatgaaagttgcgaagctccatagaagagaagtttgtaataatcatagaatc 10379
Query: 101 tctcattacctcttgagctggatttgttctgtttcattaattcacttttctcaaatgcta 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10380 tctcattacctcttgagctggatttgttctgtttcattaattcacttttctcaaatgcta 10439
Query: 161 gcatgtacatgggcaaagttttcaaagaatctggtaagattaattgccccccagaagaac 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10440 gcatgtacatgggcaaagttttcaaagaatctggtaagattaattgccccccagaagaac 10499
Query: 221 cgccattttttgctctgtattgtgtaaagatttcaatgatcttgcggtcaatgttcttcc 280
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10500 cgccacacagtgctctgtattgtgtaaagatttcaatgatcttgcggtcaatgttcttcc 10559
Query: 281 taatttcattgaaattacagtcttccaatgtggctagcacatctttgatcattatgctac 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10560 taatttcattgaaattacagtcttccaatgtggctagcacatctttgatcattatgctac 10619
Query: 341 tcaccacatcttggtttataaacttgaagacttcgattacgttcgagttgacagctgcat 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10620 tcaccacatcttggtttataaacttgaagacttcgattacgttcgagttgacagctgcat 10679
Query: 401 tagtattaattgcacgtactttacgtacaccatcgatatcagtatacaatagagctgctt 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10680 tagtattaattgcacgtactttacgtacaccatcgatatcagtatacaatagagctgctt 10739
Query: 461 ggaagcatatatcttctccgacctttagagtgtcatcgtacttgaatagcacgtcgaact 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10740 ggaagcatatatcttctccgacctttagagtgtcatcgtacttgaatagcacgtcgaact 10799
Query: 521 tttgatctctggtgagtacagggattacagggtcctcatcagtattctttacactcttcg 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 10800 tttgatctctggtgagtacagggattacagggtcctcatcagtattctttacactctccg 10859
Query: 581 aattatagttgt-aactgacagtcccggagaacaacgcacttttagcatactttgatacc 639
||| |||||||| |||||||||||| | |||||||||||||||||||||| ||||||||
Sbjct: 10860 aataatagttgtaaactgacagtccggaggaacaacgcacttttagcataccttgatacc 10919
Query: 640 cgactgtgcattttacacctcctaaaatggcattaccaaa-ttggattcatccttattga 698
||||||||||||| |||| ||||||||| ||||| |||| ||| |||||||||||||||
Sbjct: 10920 cgactgtgcatttcacactccctaaaatgtcattaacaaatttgaattcatccttattga 10979
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8930
Number of Sequences: 1807
Number of extensions: 8930
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 1018
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1002
effective length of database: 10,329,639
effective search space: 10350298278
effective search space used: 10350298278
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)