BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZB03FM1.SCF screened BAC_end
(1042 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1792 1683 0.0
>3x_Contig1792
Length = 28468
Score = 1683 bits (849), Expect = 0.0
Identities = 933/955 (97%), Gaps = 5/955 (0%)
Strand = Plus / Minus
Query: 85 cgaagtgatggcaactgcactggcttattctgattcaaactgggtaacaatccttccggt 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6442 cgaagtgatggcaactgcactggcttattctgattcaaactgggtaacaatccttccggt 6383
Query: 145 ggaggactgtgcgttggagtgcacagtaaacttgaaaaatgactttggaaatagtaatct 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6382 ggaggactgtgcgttggagtgcacagtaaacttgaaaaatgactttggaaatagtaatct 6323
Query: 205 ttttcgtccttactgtttttttccggcagttgatccatcgatctaagccttgaatgaagt 264
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 6322 ttttcgtccttactgttccttaccggcagttgatccatcgatctaagccttgaatgaagt 6263
Query: 265 tcatcataaaattctccttctgtagctgagccggaacttggtggcattgtagaactaggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6262 tcatcataaaattctccttctgtagctgagccggaacttggtggcattgtagaactaggt 6203
Query: 325 ctcatgatgggcattatggcttttgatttcttaagtggccggccatatgcatcttctgta 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6202 ctcatgatgggcattatggcttttgatttcttaagtggccggccatatgcatcttctgta 6143
Query: 385 ctcatatcctcatcttgtgagattacggtttcttgcttcagtagagtagatatgcttaca 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6142 ctcatatcctcatcttgtgagattacggtttcttgcttcagtagagtagatatgcttaca 6083
Query: 445 gtacttgaatttcttgaatgttgatctatcagttggttgagactattggatgacgagaat 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6082 gtacttgaatttcttgaatgttgatctatcagttggttgagactattggatgacgagaat 6023
Query: 505 ctggagttaagtgcagaggagctgaagcccgatggtgattgctgttccgacagatttgtc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6022 ctggagttaagtgcagaggagctgaagcccgatggtgattgctgttccgacagatttgtc 5963
Query: 565 cacgatctggttctaggcagaccgttacttatatactcgttatcaacaaactcggtcaat 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5962 cacgatctggttctaggcagaccgttacttatatactcgttatcaacaaactcggtcaat 5903
Query: 625 ggtcggttgggtgcgggatggtgaagatgtactagattctgttgcgaatgattatatgac 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5902 ggtcggttgggtgcgggatggtgaagatgtactagattctgttgcgaatgattatatgac 5843
Query: 685 tctgaattttgagacaagggtgtcattctttgtaatgatgataaagcagaaagcttagca 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5842 tctgaattttgagacaagggtgtcattctttgtaatgatgataaagcagaaagcttagca 5783
Query: 745 cgtgaagctggtcttggtaacaatagtccgctactgctgttgttgattgaatgagatgta 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5782 cgtgaagctggtcttggtaacaatagtccgctactgctgttgttgattgaatgagatgta 5723
Query: 805 nacgaaagtgacggagaggatgaagatgaagtcaacggtagtttatcaataaatttgaaa 864
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5722 aacgaaagtgacggagaggatgaagatgaagtcaacggtagtttatcaataaatttgaaa 5663
Query: 865 gaagatgangctttgtcagactcaaattttgcagcattcagcagaaggtctatgttacca 924
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5662 gaggatgaggctttgtcagactcaaattttgcagcattcagcagaaggtctatgttacca 5603
Query: 925 cctatattcctgagatctataaggtgggacacta-atattaccgcattcatnccgattca 983
|||| | |||||||||| ||||||||||||| ||| |||||||||||| ||||||||
Sbjct: 5602 -ctattattctgagatctaataggtgggacactatata-taccgcattcat-ccgattca 5546
Query: 984 tcgttaccgagatcaaacattggctttaacctc-acgatttccaagtttcagtaa 1037
||| |||||||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 5545 tcgctaccgagatcaaacattggcttcgacctcaacgatttcagaggttcagtaa 5491
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7115
Number of Sequences: 1807
Number of extensions: 7115
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 1042
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1026
effective length of database: 10,329,639
effective search space: 10598209614
effective search space used: 10598209614
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)