BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZB03RM1.SCF screened BAC_end
(1026 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig679 1415 0.0
>3x_Contig679
Length = 2347
Score = 1415 bits (714), Expect = 0.0
Identities = 767/776 (98%), Gaps = 7/776 (0%)
Strand = Plus / Plus
Query: 161 ttatttatgttcgttctttggagaatgtcggatactaacatggaagttgtcatcaataat 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttatttatgttcgttctttggagaatgtcggatactaacatggaagttgtcatcaataat 60
Query: 221 gagaaaaggtttatgtcgaagtaataattagaggcattgtaattgctgtgtataaacagt 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gagaaaaggtttatgtcgaagtaataattagaggcattgtaattgctgtgtataaacagt 120
Query: 281 acactttaaagtaaggtaggagttcactggtagcaacttttgagtatatatatttacaag 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acactttaaagtaaggtaggagttcactggtagcaacttttgagtatatatatttacaag 180
Query: 341 ataacatttaatgtgctgcccagtgtttataataaataggaagtaaaggggacaaacaag 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ataacatttaatgtgctgcccagtgtttataataaataggaagtaaaggggacaaacaag 240
Query: 401 aaaataattgaaaaaaaaggatccattcgtagttcccaagatcacttcgcaagtttggaa 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaaataattgaaaaaaaaggatccattcgtagttcccaagatcacttcgcaagtttggaa 300
Query: 461 gcctcagttaagattttagaagaggccttttgctgttgtgtatagagtccaccggtgagg 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gcctcagttaagattttagaagaggccttttgctgttgtgtatagagtccaccggtgagg 360
Query: 521 attctaattgcggctcttggttttctcaattgagaagcaaacaacaatgaacctgtcaat 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 attctaattgcggctcttggttttctcaattgagaagcaaacaacaatgaacctgtcaat 420
Query: 581 aatgccaaggcaccagcttggtgagcagaagctagagggattggaaccaaatataacaag 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aatgccaaggcaccagcttggtgagcagaagctagagggattggaaccaaatataacaag 480
Query: 641 gtaaaaatacctagagtgacttgtaaagtggcaagacccatcataccatgagcagtacgt 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gtaaaaatacctagagtgacttgtaaagtggcaagacccatcataccatgagcagtacgt 540
Query: 701 agaacttgtttaggaatgatagccttgtttctgttacagtacatgtggaatgcanacaca 760
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 541 agaacttgtttaggaatgatagccttgtttctgttacagtacatgtggaatgcaaacaca 600
Query: 761 gcgaagaaagtggttgtagccaaaatcctatgattcagttgaaccgtagttgggttttcc 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gcgaagaaagtggttgtagccaaaatcctatgattcagttgaaccgtagttgggttttcc 660
Query: 821 aacatatttctcc-aaacatatcactcttgtcttc-tttctagc-aagttntcgtcgatt 877
||||||||||||| ||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 661 aacatatttctccaaaacatatcactcttgtcttcttttctagcaaagttttcgtcgatt 720
Query: 878 aa-tcacgtttacttggtaccc-atcatca-ccatgtgaggg-aagtattgtagat 929
|| ||||||||||||||||||| ||||||| ||||||||||| |||||||||||||
Sbjct: 721 aattcacgtttacttggtacccaatcatcacccatgtgagggaaagtattgtagat 776
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7781
Number of Sequences: 1807
Number of extensions: 7781
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 1026
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1010
effective length of database: 10,329,639
effective search space: 10432935390
effective search space used: 10432935390
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)