BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZB04FM1.SCF screened BAC_end
(1004 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1030 1532 0.0
>3x_Contig1030
Length = 5200
Score = 1532 bits (773), Expect = 0.0
Identities = 884/912 (96%), Gaps = 8/912 (0%)
Strand = Plus / Minus
Query: 92 ttgattcactgctaccaaccgaatatccatctcgtgaagctttcgctgatcctgaatctt 151
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1332 ttgattcaatgctaccaaccgaatatccatctcgtgaagctttcgctgatcctgaatctt 1273
Query: 152 tatcggctaagaaaaatataaacgtatttgtaacaggtgttactggattcttgggatcct 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1272 tatcggctaagaaaaatataaacgtatttgtaacaggtgttactggattcttgggatcct 1213
Query: 212 acatcctagcagacttcctgatt-gcccgacctcttcctacaatattaaggtttttgccc 270
|||||||||||||| |||| | | ||||||||||||||||||||||||||||||||||||
Sbjct: 1212 acatcctagcagacctcctcaatcgcccgacctcttcctacaatattaaggtttttgccc 1153
Query: 271 atgtcagagctaaaactgaggctgctggttttaacaggttaaaacaagctggtataactt 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1152 atgtcagagctaaaactgaggctgctggttttaacaggttaaaacaagctggtataactt 1093
Query: 331 atggtacttggtcagattctttcataaatagaattgaggttgtgttaggtgacctttcta 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1092 atggtacttggtcagattctttcataaatagaattgaggttgtgttaggtgacctttcta 1033
Query: 391 aggagaagttcggtttgccagaaggcacttggagcaacttggtcaacgaaattgacgtta 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 aggagaagttcggtttgccagaaggcacttggagcaacttggtcaacgaaattgacgtta 973
Query: 451 tcattcacaacggtgccttggttcattgggtatatccgtactcaaagctcagagacccta 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972 tcattcacaacggtgccttggttcattgggtatatccgtactcaaagctcagagacccta 913
Query: 511 atgttgttgcaactgtcaatgttatgtctcttgccgcttcaggtaaggccaaatacttta 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 atgttgttgcaactgtcaatgttatgtctcttgccgcttcaggtaaggccaaatacttta 853
Query: 571 cgtttgtttcctctacttccacaattgataccgaacattacttttcattatctgataagt 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 cgtttgtttcctctacttccacaattgataccgaacattacttttcattatctgataagt 793
Query: 631 tagtgtcggagggaaagtctggtatcctagaagctgacgacttatcaggatctgctgtcg 690
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 792 tagtgtcggagggaaagtctggtatcctagaagct-acgacttatcaggatctgctgtcg 734
Query: 691 ggttaactagtggatatggtcaatctaaatgggccgccgaatatatcataagaagagcgg 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 ggttaactagtggatatggtcaatctaaatgggccgccgaatatatcataagaagagcgg 674
Query: 751 gggagcgtggtcttcgcggctgcattgttagaccatgttatgttaccgttgcctcatcca 810
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 673 gggagcgtggtcttcgcggctgcattgttagaccaggttatgttaccggtgcctcatcca 614
Query: 811 atgggtccgccaatactgatgatttcttgctaagattcttaaagggggtggtacagttgg 870
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 613 atgggtcgtccaatactgatgatttcttgttaagattcttaaagggggtggtacagttgg 554
Query: 871 gttcaaatccttaacatcagcaacacagagtaatattgtcaccctgttgatcactgtaac 930
| |||||||| ||||||||||||||||| |||||| || ||||||||||| |||| |
Sbjct: 553 g-tcaaatccctaacatcagcaacacag-ttaatatggt--acctgttgatca-tgtagc 499
Query: 931 acgtgttggaacacccagtgcttttcaaacctcctaaccaacataagctatctgttgcac 990
|||||||| |||| ||||||| |||||| ||||||||| ||||| ||||| |||||||||
Sbjct: 498 acgtgttgtaacagccagtgc-tttcaatcctcctaacgaacatgagctagctgttgcac 440
Query: 991 atgtaacgggcc 1002
||||||||||||
Sbjct: 439 atgtaacgggcc 428
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5411
Number of Sequences: 1807
Number of extensions: 5411
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 1004
length of database: 10,358,551
effective HSP length: 16
effective length of query: 988
effective length of database: 10,329,639
effective search space: 10205683332
effective search space used: 10205683332
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)