BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZB04RM1.SCF screened BAC_end
(993 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1697 1715 0.0
>3x_Contig1697
Length = 16220
Score = 1715 bits (865), Expect = 0.0
Identities = 930/949 (97%), Gaps = 2/949 (0%)
Strand = Plus / Minus
Query: 45 cttgaattgttacctgacttagtacttcttcttggagaagaggcagctgacgtagagtag 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15378 cttgaattgttacctgacttagtacttcttcttggagaagaggcagctgacgtagagtag 15319
Query: 105 gaagtcggcgaagtataaacactctgctgtgaacttctagaggtaggtttcccttgactt 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15318 gaagtcggcgaagtataaacactctgctgtgaacttctagaggtaggtttcccttgactt 15259
Query: 165 aaattagtcaacgaagaaggtcgtcttaattcctgttcgctagcagtatcgttatccgat 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15258 aaattagtcaacgaagaaggtcgtcttaattcctgttcgctagcagtatcgttatccgat 15199
Query: 225 tgcatatcgtttgggaaactaaagttcctcattcttatagctgcagtattattatttccc 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15198 tgcatatcgtttgggaaactaaagttcctcattcttatagctgcagtattattatttccc 15139
Query: 285 aacttgattgcaggtcgaagaacgttttcagaactgctttgtagcagggtgtgttgtgct 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15138 aacttgattgcaggtcgaagaacgttttcagaactgctttgtagcagggtgtgttgtgct 15079
Query: 345 ggcgatcccttgatcatgtgccttctcgggaaatgtgcttttgataatgatcgtggcgac 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15078 ggcgatcccttgatcatgtgccttctcgggaaatgtgcttttgataatgatcgtggcgac 15019
Query: 405 acagaattccccgtaagaaattttgatctgtcaccttcatcatcaaaattcatctcataa 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15018 acagaattccccgtaagaaattttgatctgtcaccttcatcatcaaaattcatctcataa 14959
Query: 465 ttgttgagaaacaactcggcagtacgagggttaccaaattcttgagtcattgttgaaaag 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14958 ttgttgagaaacaactcggcagtacgagggttaccaaattcttgagtcattgttgaaaag 14899
Query: 525 gaaaaatactatacacaagtgcgaatgagttaatggcagtggaagggatatattgtgatt 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14898 gaaaaatactatacacaagtgcgaatgagttaatggcagtggaagggatatattgtgatt 14839
Query: 585 gaaataattgattcgaaatttcattcgactgaattcaaaccatatcccatccttattcct 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14838 gaaataattgattcgaaatttcattcgactgaattcaaaccatatcccatccttattcct 14779
Query: 645 ggtgatatatatacgaataaaatttaattgaaattagcgatgagcatggtcaagaagaat 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14778 ggtgatatatatacgaataaaatttaattgaaattagcgatgagcatggtcaagaagaat 14719
Query: 705 aataagtatatcatgtaataaaatcatcagatcaagtctttgcagacagaggagaaagtg 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14718 aataagtatatcatgtaataaaatcatcagatcaagtctttgcagacagaggagaaagtg 14659
Query: 765 tcgataaatcagattagttgtgccgtcccctctgggaccctgcgcctctgaatacttgaa 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14658 tcgataaatcagattagttgtgccgtcccctctgggaccctgcgcctctgaatacttgaa 14599
Query: 825 gaaactgtgctacagaatccgtttatagtgttccgtatcctatagcaagacacattctgt 884
||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct: 14598 gaaactgtgctacagaatcggtttatagtgtcccgtatccaatagcaagacacattctgt 14539
Query: 885 gacgcatctacagattcatttttgaatcagcgagaggaga-tatcaactgtagtctaaag 943
|||||| |||||||||||| |||| ||||||||||||||| || ||||| ||| ||||
Sbjct: 14538 gacgcagctacagattcatctttggatcagcgagaggagattagaaactgaagtagaaag 14479
Query: 944 cacgtctggcgttgactatttcc-actctacattattggttttatcctc 991
|| ||||||||||||||||||| | |||||||||| ||| |||||||
Sbjct: 14478 cagctctggcgttgactatttccaattctacattatatgttctatcctc 14430
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7676
Number of Sequences: 1807
Number of extensions: 7676
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 993
length of database: 10,358,551
effective HSP length: 16
effective length of query: 977
effective length of database: 10,329,639
effective search space: 10092057303
effective search space used: 10092057303
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)