BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZB05FM1.SCF screened BAC_end
(1007 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1517 1225 0.0
3x_Contig38 959 0.0
>3x_Contig1517
Length = 8289
Score = 1225 bits (618), Expect = 0.0
Identities = 680/695 (97%), Gaps = 5/695 (0%)
Strand = Plus / Minus
Query: 234 gaaaaaaagcatattaaaggcaatattgaaggctcgatcaagagatatctaacaagaaaa 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5208 gaaaaaaagcatattaaaggcaatattgaaggctcgatcaagagatatctaacaagaaaa 5149
Query: 294 agataaccagtacctgtagtatcagcttcatctacgaaactttcttaacgggtgaattta 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5148 agataaccagtacctgtagtatcagcttcatctacgaaactttcttaacgggtgaattta 5089
Query: 354 caaacatttctaatgatcttcattttaagcttccagaaagttctcggttggccataagat 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5088 caaacatttctaatgatcttcattttaagcttccagaaagttctcggttggccataagat 5029
Query: 414 aaattaggacaaacgaaacaacacctacaaaagtagcagcgaacagatcatctgcttaga 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5028 aaattaggacaaacgaaacaacacctacaaaagtagcagcgaacagatcatctgcttaga 4969
Query: 474 atagttcactgcgaatgagcaaggtattagctatacaatgtcatcaggcttcaagatgaa 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4968 atagttcactgcgaatgagcaaggtattagctatacaatgtcatcaggcttcaagatgaa 4909
Query: 534 gaggtcaaggagtcctgacccgataggaatcgataactataagaaacaacggctaatata 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4908 gaggtcaaggagtcctgacccgataggaatcgataactataagaaacaacggctaatata 4849
Query: 594 tgatttcgaaaacctatcgttggctcctaggggaaccgatgggataaagaaacatannaa 653
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 4848 tgatttcgaaaacctatcgttggctcctaggggaaccgatgggataaagaaacataaaat 4789
Query: 654 tgattcagggttgaactcattcaaagcagttgtaaataaaaggatgtgggatgtagttga 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4788 tgattcagggttgaactcattcaaagcagttgtaaataaaaggatgtgggatgtagttga 4729
Query: 714 acgcgaattgagtggttcanacaaaaatgataagatatatgaaagaatattcgatcatgt 773
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 4728 acgcgaattgagtggttcaaacaaaaatgataagatatatgaaagaatattcgatcatgt 4669
Query: 774 acgacagtttaactcgcaggtaataaaatggtatgactggcgatctgtggtagcaagctt 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4668 acgacagtttaactcgcaggtaataaaatggtatgactggcgatctgtggtagcaagctt 4609
Query: 834 gtgggtaaaagggt-cccacagcttagtcc-aaattagatgaagtagatatg-atgttga 890
|||||||||| ||| || ||||| |||||| ||||||||||||||||||||| |||||||
Sbjct: 4608 gtgggtaaaatggtaccaacagcatagtccaaaattagatgaagtagatatgaatgttga 4549
Query: 891 gactgc-gcatatctcaga-ttgatctggcaccga 923
|||||| ||| || |||| |||||||||||||||
Sbjct: 4548 gactgcagcagattccagagttgatctggcaccga 4514
Score = 270 bits (136), Expect = 5e-72
Identities = 136/136 (100%)
Strand = Plus / Minus
Query: 89 cagtgatagaaatcataaactttttcttataacgttgttgaagtaaaccaagttgctgtg 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5352 cagtgatagaaatcataaactttttcttataacgttgttgaagtaaaccaagttgctgtg 5293
Query: 149 aactaaatgtttcagtatgaaaaagacattcgaaacccttaattatgaagaagatcaaat 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5292 aactaaatgtttcagtatgaaaaagacattcgaaacccttaattatgaagaagatcaaat 5233
Query: 209 acatatctcttagaag 224
||||||||||||||||
Sbjct: 5232 acatatctcttagaag 5217
>3x_Contig38
Length = 925
Score = 959 bits (484), Expect = 0.0
Identities = 548/568 (96%), Gaps = 13/568 (2%)
Strand = Plus / Minus
Query: 332 actttcttaacgggtgaatttacaaacatttctaatgatcttcattttaagcttccagaa 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 actttcttaacgggtgaatttacaaacatttctaatgatcttcattttaagcttccagaa 524
Query: 392 agttctcggttggccataagataaattaggacaaacgaaacaacacctacaaaagtagca 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 agttctcggttggccataagataaattaggacaaacgaaacaacacctacaaaagtagca 464
Query: 452 gcgaacagatcatctgcttagaatagttcactgcgaatgagcaaggtattagctatacaa 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gcgaacagatcatctgcttagaatagttcactgcgaatgagcaaggtattagctatacaa 404
Query: 512 tgtcatcaggcttcaagatgaagaggtcaaggagtcctgacccgataggaatcgataact 571
|||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 403 tgtcatcaggcttcaagatgaagaggtcaaggagtcctgacc----------cgataact 354
Query: 572 ataagaaacaacggctaatatatgatttcgaaaacctatcgttggctcctaggggaaccg 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ataagaaacaacggctaatatatgatttcgaaaacctatcgttggctcctaggggaaccg 294
Query: 632 atgggataaagaaacatannaatgattcagggttgaactcattcaaagcagttgtaaata 691
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 293 atgggataaagaaacataaaattgattcagggttgaactcattcaaagcagttgtaaata 234
Query: 692 aaaggatgtgggatgtagttgaacgcgaattgagtggttcanacaaaaatgataagatat 751
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 233 aaaggatgtgggatgtagttgaacgcgaattgagtggttcaaacaaaaatgataagatat 174
Query: 752 atgaaagaatattcgatcatgtacgacagtttaactcgcaggtaataaaatggtatgact 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 atgaaagaatattcgatcatgtacgacagtttaactcgcaggtaataaaatggtatgact 114
Query: 812 ggcgatctgtggtagcaagcttgtgggtaaaagggt-cccacagcttagtcc-aaattag 869
|||||||||||||||||||||||||||||||| ||| || ||||| |||||| |||||||
Sbjct: 113 ggcgatctgtggtagcaagcttgtgggtaaaatggtaccaacagcatagtccaaaattag 54
Query: 870 atgaagtagatatg-atgttgagactgc 896
|||||||||||||| |||||||||||||
Sbjct: 53 atgaagtagatatgaatgttgagactgc 26
Score = 222 bits (112), Expect = 1e-57
Identities = 130/136 (95%)
Strand = Plus / Minus
Query: 89 cagtgatagaaatcataaactttttcttataacgttgttgaagtaaaccaagttgctgtg 148
|||||||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 815 cagtgatagaaaaaataaaattagacttataacgttgttgaagtaaaccaagttgctgtg 756
Query: 149 aactaaatgtttcagtatgaaaaagacattcgaaacccttaattatgaagaagatcaaat 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 aactaaatgtttcagtatgaaaaagacattcgaaacccttaattatgaagaagatcaaat 696
Query: 209 acatatctcttagaag 224
||||||||||||||||
Sbjct: 695 acatatctcttagaag 680
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6941
Number of Sequences: 1807
Number of extensions: 6941
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 2
length of query: 1007
length of database: 10,358,551
effective HSP length: 16
effective length of query: 991
effective length of database: 10,329,639
effective search space: 10236672249
effective search space used: 10236672249
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)