BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZB05RM1.SCF screened BAC_end
(1031 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1553 1407 0.0
>3x_Contig1553
Length = 8593
Score = 1407 bits (710), Expect = 0.0
Identities = 781/794 (98%), Gaps = 8/794 (1%)
Strand = Plus / Minus
Query: 39 cttcgtatccacagttaatatggctgcataatgtcatacgaaaatatagaaatgaaaata 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4094 cttcgtatccacagttaatatggctgcataatgtcatacgaaaatatagaaatgaaaata 4035
Query: 99 gtaaatataagataccagaaagttgcaacataaagctgacattaaatacagtcatatgaa 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4034 gtaaatataagataccagaaagttgcaacataaagctgacattaaatacagtcatatgaa 3975
Query: 159 agaaatactatcgatcggcaccaatactacgaagtgcaatagattgtcagagatcataat 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3974 agaaatactatcgatcggcaccaatactacgaagtgcaatagattgtcagagatcataat 3915
Query: 219 tatttcaaaggctccgtcgttaattgtgtactaatatgcctattccacctttgtatactt 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3914 tatttcaaaggctccgtcgttaattgtgtactaatatgcctattccacctttgtatactt 3855
Query: 279 cttctgcaggggatttcagatccgacacattcacgataccgacaaaagatttctggagcc 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3854 cttctgcaggggatttcagatccgacacattcacgataccgacaaaagatttctggagcc 3795
Query: 339 aagtgaccgatgcttcattgggagatactatcaatttagaagatacagatacgtgttcat 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3794 aagtgaccgatgcttcattgggagatactatcaatttagaagatacagatacgtgttcat 3735
Query: 399 tggaagctagattatctgacgagattcttggtggcagggttcacagtggcgagaaatcag 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3734 tggaagctagattatctgacgagattcttggtggcagggttcacagtggcgagaaatcag 3675
Query: 459 agggtttgttttgcatgtcaacaacattggcaaaccaaatagctgtccgctcccacttga 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3674 agggtttgttttgcatgtcaacaacattggcaaaccaaatagctgtccgctcccacttga 3615
Query: 519 atttcgcaccaccttactctgtactttgtgataaacgagctcatatttttgttgatgaat 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3614 atttcgcaccaccttactctgtactttgtgataaacgagctcatatttttgttgatgaat 3555
Query: 579 gtgccgggattgcagtactttcccaagctttggtaatgcctaccatggcaagtaacggct 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3554 gtgccgggattgcagtactttcccaagctttggtaatgcctaccatggcaagtaacggct 3495
Query: 639 gttacttaacattggaagatattaaggagaattatgtccctgacataggcgatatacacc 698
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 3494 gttacttaacattggaagatataaaggagaattatgtccctgacataggcgatatacacc 3435
Query: 699 tagcttcaac-agattaatatgctttggagaacaccttggcatggtatgtttgtttcctc 757
||||| |||| |||||||||||| |||||||||||||| |||||||||| ||||||||||
Sbjct: 3434 tagctccaacaagattaatatgc-ttggagaacacctt-gcatggtatg-ttgtttcctc 3378
Query: 758 tgacttgaacttc-aagaattagcgactgggcttcatttccaagacatttaaattcatct 816
|||| |||||||| |||||| ||||||||||| ||||| |||||||||| |||||||||
Sbjct: 3377 tgac-tgaacttcaaagaatcagcgactgggc-tcattcccaagacattaaaattcatc- 3321
Query: 817 tcgatggagcaaga 830
||||||||||||||
Sbjct: 3320 tcgatggagcaaga 3307
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7338
Number of Sequences: 1807
Number of extensions: 7338
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 1031
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1015
effective length of database: 10,329,639
effective search space: 10484583585
effective search space used: 10484583585
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)