BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZB06FM1.SCF screened BAC_end
(1029 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1659 1451 0.0
>3x_Contig1659
Length = 17570
Score = 1451 bits (732), Expect = 0.0
Identities = 789/807 (97%), Gaps = 1/807 (0%)
Strand = Plus / Plus
Query: 88 ctgcaaagcacgtgctctcaaagagattccgcaccttttcaagcctctcatcttcttaga 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9120 ctgcaaagcacgtgctctcaaagagattccgcaccttttcaagcctctcatcttcttaga 9179
Query: 148 atatatgctggcttattgctgctgctgttgccttactaaaatgtgtcaatagaagcctct 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9180 atatatgctggcttattgctgctgctgttgccttactaaaatgtgtcaatagaagcctct 9239
Query: 208 caatgtatgtttcgctacttgaatctagaatttaaaggttttttccatgagtgttgagtc 267
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 9240 caatgtatgtttcgctacttgaagctagaatttaaaggttttttccatgagtgttgagtc 9299
Query: 268 tcgacaggtttctgcagcgacagaaaataaaattatctgtcacgtgaataagcacttaat 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9300 tcgacaggtttctgcagcgacagaaaataaaattatctgtcacgtgaataagcacttaat 9359
Query: 328 tcccatccatacataagtagataaatatatatatcgggatgattaaaacacgtactcttt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9360 tcccatccatacataagtagataaatatatatatcgggatgattaaaacacgtactcttt 9419
Query: 388 gatttctagagtgttatggttgtctctgataagaattaaaaccctagtagaatccagccc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9420 gatttctagagtgttatggttgtctctgataagaattaaaaccctagtagaatccagccc 9479
Query: 448 atatgtattgtatttgtggaaaatgacgttggcgatggatcgctttctgatgtagcattt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9480 atatgtattgtatttgtggaaaatgacgttggcgatggatcgctttctgatgtagcattt 9539
Query: 508 ttctaaagggaaaagcacggtttcctcacgattgtatggtaaaatatcaagtatctctgc 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9540 ttctaaagggaaaagcacggtttcctcacgattgtatggtaaaatatcaagtatctctgc 9599
Query: 568 ataccccgcccaattccaattgagattcactggaaacttcaagtttggtgtgttcaaaga 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9600 ataccccgcccaattccaattgagattcactggaaacttcaagtttggtgtgttcaaaga 9659
Query: 628 gaacatatcgacttctgtttctaatcgcttcccgtatagggcgcaatgcaattcctcatt 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9660 gaacatatcgacttctgtttctaatcgcttcccgtatagggcgcaatgcaattcctcatt 9719
Query: 688 tcttattatagagagtatttccttgttcttggataagttggagtacctgctttgaaattc 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9720 tcttattatagagagtatttccttgttcttggataagttggagtacctgctttgaaattc 9779
Query: 748 tgccaatattttacctctatgattcagcanaataaggttttgacatggatattcccccat 807
||||||||||||||||||||||||||||| |||||| || ||| ||||||||| ||| ||
Sbjct: 9780 tgccaatattttacctctatgattcagcaaaataagtttctgaaatggatatttcccaat 9839
Query: 808 tgacaagactatatccgattccggctcatttccctgttcgagttattgaaattacacgcc 867
|||||||| || ||| ||||| ||||||||| |||||||||| |||||||||| | |||
Sbjct: 9840 tgacaagagtaaatctgattcgggctcattt-gctgttcgagtaattgaaattataggcc 9898
Query: 868 catccgattcgaaccatgtttatgcct 894
||||||||| ||||||||| |||||||
Sbjct: 9899 catccgatttgaaccatgtatatgcct 9925
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7678
Number of Sequences: 1807
Number of extensions: 7678
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 1029
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1013
effective length of database: 10,329,639
effective search space: 10463924307
effective search space used: 10463924307
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)