BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZB06RM1.SCF screened BAC_end
(1031 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1774 1784 0.0
>3x_Contig1774
Length = 27771
Score = 1784 bits (900), Expect = 0.0
Identities = 921/927 (99%), Gaps = 1/927 (0%)
Strand = Plus / Minus
Query: 54 cttatcaaatgatttttaagataaaaaggtagaccaaaataataataccaaacaaaccca 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16954 cttatcaaatgatttttaagataaaaaggtagaccaaaataataataccaaacaaaccca 16895
Query: 114 atcgggactaaataagatcccagtaagactcaccgaaccaacatgtcctcacttgacatc 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16894 atcgggactaaataagatcccagtaagactcaccgaaccaacatgtcctcacttgacatc 16835
Query: 174 aatgagcaacgtgctcttataaagtctgctcacagatacatctcagagaaactcgaggat 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16834 aatgagcaacgtgctcttataaagtctgctcacagatacatctcagagaaactcgaggat 16775
Query: 234 cacttctcatccgagtttttaccaaaggctcttgtgatttgtggatctggtttaagtgga 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16774 cacttctcatccgagtttttaccaaaggctcttgtgatttgtggatctggtttaagtgga 16715
Query: 294 atctcaaccaagatcgctgatgaaccaaagccattgattctgtcttattcgaccattcct 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16714 atctcaaccaagatcgctgatgaaccaaagccattgattctgtcttattcgaccattcct 16655
Query: 354 ggcttcaaagtcagcaccgtacctggacatagtggtgagttgatctttggctacatgaac 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16654 ggcttcaaagtcagcaccgtacctggacatagtggtgagttgatctttggctacatgaac 16595
Query: 414 ggtgcgcctgtcgtcttaatgaatggccgtttgcattcttatgagggccattccttagca 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16594 ggtgcgcctgtcgtcttaatgaatggccgtttgcattcttatgagggccattccttagca 16535
Query: 474 gaaacagtgcatcctatccgtgcattgcacttgttggggtcaatcaatgtcttgatcgta 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16534 gaaacagtgcatcctatccgtgcattgcacttgttggggtcaatcaatgtcttgatcgta 16475
Query: 534 acaaatgcagccggtggtatcaatgcctcctttaaggctggggatttaatgtgtgtctac 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16474 acaaatgcagccggtggtatcaatgcctcctttaaggctggggatttaatgtgtgtctac 16415
Query: 594 gaccatatcaatttcccaggattatgcgggttccatcctctaaggggagctaattttgac 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16414 gaccatatcaatttcccaggattatgcgggttccatcctctaaggggagctaattttgac 16355
Query: 654 gaatttgggccaagattcttggctaccagtgatgcttatgacttggaactacgtaagcta 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16354 gaatttgggccaagattcttggctaccagtgatgcttatgacttggaactacgtaagcta 16295
Query: 714 ttgttttcaaagaaaaaagagctcaatatcgaaagaaagatccatgagggtacctactca 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16294 ttgttttcaaagaaaaaagagctcaatatcgaaagaaagatccatgagggtacctactca 16235
Query: 774 tacgttcatggtcctaccttcgaaagcagagctgaatcacgtttcttgagattggctggt 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16234 tacgttcatggtcctaccttcgaaagcagagctgaatcacgtttcttgagattggctggt 16175
Query: 834 acagatgctgttggaatgagtactgttcctgaggttgntactgctagacattgtggctgg 893
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 16174 acagatgctgtgggaatgagtactgttcctgaggttgttactgctagacattgtggctgg 16115
Query: 894 agagtacttgccttatcctttatcacaaatgaatgtgtcgttgatcctccaaccagtgct 953
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 16114 agagtacttgccttatccttaatcacaaatgaatgtgtcgttgatcctccagccagtgct 16055
Query: 954 catgatgaaaattcgcgtaccaattca 980
|||||||||||| || |||||||||||
Sbjct: 16054 catgatgaaaatccg-gtaccaattca 16029
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6506
Number of Sequences: 1807
Number of extensions: 6506
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 1031
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1015
effective length of database: 10,329,639
effective search space: 10484583585
effective search space used: 10484583585
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)