BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZB07FM1.SCF screened BAC_end
(1029 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1338 967 0.0
>3x_Contig1338
Length = 8134
Score = 967 bits (488), Expect = 0.0
Identities = 537/552 (97%), Gaps = 1/552 (0%)
Strand = Plus / Plus
Query: 86 aatgcgaatttgc-aactattttggaattttgcttctcatagctagctattatctgtact 144
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5322 aatgcgaatttgttaactattttggaattttgcttctcatagctagctattatctgtact 5381
Query: 145 tgcatcatattcgtcgaagtataggacaatatatggtcatataaaggaatggattagtcc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5382 tgcatcatattcgtcgaagtataggacaatatatggtcatataaaggaatggattagtcc 5441
Query: 205 aatgcagacgtttcgcaaagtttttttctgctacgttcaaatatctaattcagcaaagtc 264
||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct: 5442 aatgcagacgtttcgcaaagtatgtagctgctacgttcaaatatctaattcagcaaagtc 5501
Query: 265 acgtgctagaataacgatagaggacataaactgagagatcctcacaaccaagcaatctgt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5502 acgtgctagaataacgatagaggacataaactgagagatcctcacaaccaagcaatctgt 5561
Query: 325 gtacgactccgcgtagaattaaagacaaagaagctctgactttgtcaaatcgtcaagaaa 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5562 gtacgactccgcgtagaattaaagacaaagaagctctgactttgtcaaatcgtcaagaaa 5621
Query: 385 ctcataaattgagacgaaagaacacaaatcagttaaagcatcgtctaatcttaatgctgt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5622 ctcataaattgagacgaaagaacacaaatcagttaaagcatcgtctaatcttaatgctgt 5681
Query: 445 ttaaacaaccggaatggctacaaacaatccccctgctacctaattaaaccgaaagattac 504
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 5682 ttaaacaaccggaatggctacaaacaatctccctgctacctaattaaaccgaaagattac 5741
Query: 505 attttccctagaaggaccctggcttaatcaggactgtactaaattcaatatggtccacaa 564
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 5742 attttccctagaaggaccctggcttaatcaggactgtactaaattcaatagggtccacaa 5801
Query: 565 ctgcaaaaacatagatctattctttataattcttcacgtattttttcaaagacgctgact 624
|||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||
Sbjct: 5802 ctgcaaaaacatagatctattcttactaatcgttcaggtattttttcaaagacgctgaca 5861
Query: 625 aaattctgcacg 636
|||||||||||
Sbjct: 5862 gaattctgcacg 5873
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,428
Number of Sequences: 1807
Number of extensions: 12428
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 1029
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1013
effective length of database: 10,329,639
effective search space: 10463924307
effective search space used: 10463924307
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)