BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZB08FM1.SCF screened BAC_end
(1040 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig634 1003 0.0
>3x_Contig634
Length = 1748
Score = 1003 bits (506), Expect = 0.0
Identities = 537/545 (98%), Gaps = 2/545 (0%)
Strand = Plus / Minus
Query: 88 ctatactatggcagaggagctgaaaggatttcctcatgagagactatctatctcattgag 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ctatactatggcagaggagctgaaaggatttcctcatgagagactatctatctcattgag 487
Query: 148 gagtaattcacagcaatatcaagatattcttttgttttttgatgattatcagtttgattt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gagtaattcacagcaatatcaagatattcttttgttttttgatgattatcagtttgattt 427
Query: 208 ggatagcaccaaccagcacttgtgtagtctggcagaattactgttaaagtctcatacact 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ggatagcaccaaccagcacttgtgtagtctggcagaattactgttaaagtctcatacact 367
Query: 268 gttggcagagctgttttctgatgatgtgagcgtttctcaactcttaccgtattttgattg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gttggcagagctgttttctgatgatgtgagcgtttctcaactcttaccgtattttgattg 307
Query: 328 gattcaagagggaagatctgaattttatcagctcttcaacgggataaagaccatcgaaaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gattcaagagggaagatctgaattttatcagctcttcaacgggataaagaccatcgaaaa 247
Query: 388 ggtgttgctgcatctgatggaaatcatcgaagaggaatttgggtgtaatgaagatgaact 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ggtgttgctgcatctgatggaaatcatcgaagaggaatttgggtgtaatgaagatgaact 187
Query: 448 attccagaaggagttgactgcactttttgatttattagaggagatatcagatacattagt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 attccagaaggagttgactgcactttttgatttattagaggagatatcagatacattagt 127
Query: 508 gtccataaaaccaatcatctcatcatttaaaaacctgttcgacaccgccatagagttcaa 567
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 126 gtccataaaaccaatcatctcatcattaaaaaacctgttcgacaccgccatagagttcaa 67
Query: 568 cgaaatatttcaagatcatattgaccagtctagatgaagagataganaacattttgtcta 627
||||||||| ||||||||| ||| ||||||||||||||||||||| |||| |||||||
Sbjct: 66 cgaaatattcaaagatcata-tgaacagtctagatgaagagatagaaaaca-attgtcta 9
Query: 628 aatgc 632
|||||
Sbjct: 8 aatgc 4
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9463
Number of Sequences: 1807
Number of extensions: 9463
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 1040
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1024
effective length of database: 10,329,639
effective search space: 10577550336
effective search space used: 10577550336
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)