BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZB08RM1.SCF screened BAC_end
(1054 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1805 811 0.0
>3x_Contig1805
Length = 19369
Score = 811 bits (409), Expect = 0.0
Identities = 445/453 (98%), Gaps = 3/453 (0%)
Strand = Plus / Minus
Query: 47 tggaataaagaaattccaaatccgacacttgggttctatccgaagccggaatttttcttt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4375 tggaataaagaaattccaaatccgacacttgggttctatccgaagccggaatttttcttt 4316
Query: 107 attttgttatcactgctcctaagtacgggcatttgaatgggcagagctgcatttttctgc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4315 attttgttatcactgctcctaagtacgggcatttgaatgggcagagctgcatttttctgc 4256
Query: 167 gtagatcttttcgaaatacctagatcgacagattggacatgcaatttttttctatgcacg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4255 gtagatcttttcgaaatacctagatcgacagattggacatgcaatttttttctatgcacg 4196
Query: 227 acgcacaaagaatgaagattggaaagaaaaacaggaaacgaaaaaccaaaaaaaaaaaaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4195 acgcacaaagaatgaagattggaaagaaaaacaggaaacgaaaaaccaaaaaaaaaaaaa 4136
Query: 287 gcaaagcacgtttgatattgcaataacacaagcgcaagaataactccagcagcaatgaaa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4135 gcaaagcacgtttgatattgcaataacacaagcgcaagaataactccagcagcaatgaaa 4076
Query: 347 aacgtttgtagatctttcgaggaatgtttcttgtttctatttttggttcgagaaatcttt 406
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 4075 aacgtttgtagatctttcgaggaatgtttcttgtttctatttttgttccgagaaatcttt 4016
Query: 407 acttccgttttttttttgtgggcgaccgtacaaacttcagttg-cacggttggctgaaag 465
||||||| ||||||||||||||||||||||| ||| ||||||| ||||||||||||||||
Sbjct: 4015 acttccg-tttttttttgtgggcgaccgtac-aacctcagttgccacggttggctgaaag 3958
Query: 466 tgcgtcttgccaagttgaaaagtttgactgagc 498
|||||||||||| ||||||| ||||||||||||
Sbjct: 3957 tgcgtcttgccaggttgaaaggtttgactgagc 3925
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 26,047
Number of Sequences: 1807
Number of extensions: 26047
Number of successful extensions: 397
Number of sequences better than 1.0e-20: 1
length of query: 1054
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1038
effective length of database: 10,329,639
effective search space: 10722165282
effective search space used: 10722165282
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)