BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZB09FM1.SCF screened BAC_end
(1033 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1708 908 0.0
3x_Contig1760 660 0.0
>3x_Contig1708
Length = 19451
Score = 908 bits (458), Expect = 0.0
Identities = 529/546 (96%), Gaps = 5/546 (0%)
Strand = Plus / Plus
Query: 385 atctcatcgataaagagattgcatgtcgacgcagcaactgataaagaaatttttaaagtc 444
|||||||||||||||||||||||| | | ||||||||||||||| ||||||||||||||
Sbjct: 1 atctcatcgataaagagattgcatttgtaggcagcaactgataaataaatttttaaagtc 60
Query: 445 acgtgacaagtatcaacagtttctgaaaaaatctgaaaatctcaattacaaaaggtttct 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgtgacaagtatcaacagtttctgaaaaaatctgaaaatctcaattacaaaaggtttct 120
Query: 505 aatcgcaagcaattctcttgttattcggttcaacctgcatttaaactcgaattataccgt 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aatcgcaagcaattctcttgttattcggttcaacctgcatttaaactcgaattataccgt 180
Query: 565 ctattgcctgattctctgactaagcgaagcagtttattatgtctaagttttatgacgatg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctattgcctgattctctgactaagcgaagcagtttattatgtctaagttttatgacgatg 240
Query: 625 atgacgctgtggattatgacgacgatgtacctgattt-caggacgaggatgaatttgacg 683
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 241 atgacgctgtggattatgacgacgatgtacctgatttccaggacgaggatgaatttgacg 300
Query: 684 attatttaaacgatgaagaatttgaattgatgaaccagttgtttcccctggcgaaggagc 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 attatttaaacgatgaagaatttgaattgatgaaccagttgtttcccctggcgaaggagc 360
Query: 744 aattagctgattatcagggttgggataacttggccgtgaaagttgcgatttttgatcaca 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aattagctgattatcagggttgggataacttggccgtgaaagttgcgatttttgatcaca 420
Query: 804 a-ttcgagttag-acctgcattggtcgatttaaagagaagattc-aggaaaagggtatgt 860
| |||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 421 atttcgagttagaacctgcattggtcgatttaaagagaagattcaagaaaaagggtatgt 480
Query: 861 attattggcattggaccgggcggggttttatatttttacgcg-tctcagttatgatttct 919
|| ||||||||||||| ||||| |||||||||||||||| | | |||||||||||||||
Sbjct: 481 ataattggcattggacgtggcggtgttttatatttttacgtgttttcagttatgatttct 540
Query: 920 tgttgg 925
||||||
Sbjct: 541 tgttgg 546
>3x_Contig1760
Length = 27266
Score = 660 bits (333), Expect = 0.0
Identities = 340/341 (99%), Gaps = 1/341 (0%)
Strand = Plus / Plus
Query: 84 ccccttccatagcaaatgctggggttcccacgctcttgcaatgctt-cgcggtacgatat 142
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 26926 ccccttccatagcaaatgctggggttcccacgctcttgcaatgctttcgcggtacgatat 26985
Query: 143 tatacaaaacacaactctgtatcactcgttgatgcgttgtcagcacattctccggaactg 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26986 tatacaaaacacaactctgtatcactcgttgatgcgttgtcagcacattctccggaactg 27045
Query: 203 tcatccgaaaacgtatcggctatatcacttctgttctcttcaaaatattacctaggaaat 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27046 tcatccgaaaacgtatcggctatatcacttctgttctcttcaaaatattacctaggaaat 27105
Query: 263 tcaactcgttcacctgttaaatcacctaccgggaattaccttcttgaccaaaaaaagaat 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27106 tcaactcgttcacctgttaaatcacctaccgggaattaccttcttgaccaaaaaaagaat 27165
Query: 323 gtactaatggacaaactgcactgtttacaactcacttcatgctatcgataacaactcatc 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27166 gtactaatggacaaactgcactgtttacaactcacttcatgctatcgataacaactcatc 27225
Query: 383 tcatctcatcgataaagagattgcatgtcgacgcagcaact 423
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 27226 tcatctcatcgataaagagattgcatgtcgacgcagcaact 27266
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8238
Number of Sequences: 1807
Number of extensions: 8238
Number of successful extensions: 314
Number of sequences better than 1.0e-20: 2
length of query: 1033
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1017
effective length of database: 10,329,639
effective search space: 10505242863
effective search space used: 10505242863
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)