BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZB09RM1.SCF screened BAC_end
(1040 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1142 1259 0.0
>3x_Contig1142
Length = 5741
Score = 1259 bits (635), Expect = 0.0
Identities = 650/654 (99%), Gaps = 2/654 (0%)
Strand = Plus / Minus
Query: 44 cttgttttacgagattatccacgtatgaattgtaatcatctttgatcaatgtgaatgggt 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 cttgttttacgagattatccacgtatgaattgtaatcatctttgatcaatgtgaatgggt 595
Query: 104 aagagaaatcgatggtgaaactgaagaatttacccactggcaaatcctggttagcattcg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 aagagaaatcgatggtgaaactgaagaatttacccactggcaaatcctggttagcattcg 535
Query: 164 aataatcatcttccgtagtgacacctttataccttagaaattcatgttgaggctcaaact 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 aataatcatcttccgtagtgacacctttataccttagaaattcatgttgaggctcaaact 475
Query: 224 ctgaagagacgactttgattctcaatttttcaagctgtgtcgctttcttcttaccccctt 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ctgaagagacgactttgattctcaatttttcaagctgtgtcgctttcttcttaccccctt 415
Query: 284 cctctgtcttggatgtgactttcttcttaaagatgatctcatcatcagtattgataatgt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 cctctgtcttggatgtgactttcttcttaaagatgatctcatcatcagtattgataatgt 355
Query: 344 tgtacagtgtgaataaatcttctttatcctgaggttgaagagtcaaaatggctctttccc 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tgtacagtgtgaataaatcttctttatcctgaggttgaagagtcaaaatggctctttccc 295
Query: 404 cactgtgtgaaccggtcactttattgattaacctcattgcttctttacccgttaacttga 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 cactgtgtgaaccggtcactttattgattaacctcattgcttctttacccgttaacttga 235
Query: 464 gacacctctttgggtacgttctgtattaagtgctgtttcaataaattgctgtcaggtgta 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 gacacctctttgggtacgttctgtattaagtgctgtttcaataaattgctgtcaggtgta 175
Query: 524 taaggtatgcttttgccaatacctctttatttcatgatttatagtcagatttcattttta 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 taaggtatgcttttgccaatacctctttatttcatgatttatagtcagatttcattttta 115
Query: 584 agctttgaaaaaaaaaggtttgccatgaagataccgaagagaagaagcaactaggtaagt 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 agctttgaaaaaaaaaggtttgccatgaagataccgaagagaagaagcaactaggtaagt 55
Query: 644 tacatggacaattacattgacaaaagtttgtt--cgtatggcttaatgtgtaaa 695
|||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 54 tacatggacaattacattgacaaaagtttgtttctgtatcgcttaatgtgtaaa 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,404
Number of Sequences: 1807
Number of extensions: 12404
Number of successful extensions: 183
Number of sequences better than 1.0e-20: 1
length of query: 1040
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1024
effective length of database: 10,329,639
effective search space: 10577550336
effective search space used: 10577550336
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)