BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZB10FM1.SCF screened BAC_end
(1007 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1760 827 0.0
>3x_Contig1760
Length = 27266
Score = 827 bits (417), Expect = 0.0
Identities = 436/440 (99%), Gaps = 2/440 (0%)
Strand = Plus / Plus
Query: 87 ctaaggcccaaagatcgtacaacgatgtcattagattctgcgatggcggtggatcaatga 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22913 ctaaggcccaaagatcgtacaacgatgtcattagattctgcgatggcggtggatcaatga 22972
Query: 147 aagggaatttcgataagttgttgatattcaacgatttcaactgcaagagtgtatttgcca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22973 aagggaatttcgataagttgttgatattcaacgatttcaactgcaagagtgtatttgcca 23032
Query: 207 aatttgtcctttgaatttctgggatggcctgaggatacatatcttccatcgctgaatcat 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23033 aatttgtcctttgaatttctgggatggcctgaggatacatatcttccatcgctgaatcat 23092
Query: 267 gagtgaaaagtctatatgcgataccagggcccgtacgaccagcccttcctgaccgttgat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23093 gagtgaaaagtctatatgcgataccagggcccgtacgaccagcccttcctgaccgttgat 23152
Query: 327 tagcatttgcaagtgagatgggtgtgattcgcaaactatcaaggccgattttcggattat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23153 tagcatttgcaagtgagatgggtgtgattcgcaaactatcaaggccgattttcggattat 23212
Query: 387 acaccttcaatttggagtacccacaatctatgacatatttaataccgtcaactgtcaatg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23213 acaccttcaatttggagtacccacaatctatgacatatttaataccgtcaactgtcaatg 23272
Query: 447 atgtttcagcaatatttgtggcaacaacaatctttctaacggtttgntccttgtctttga 506
||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||
Sbjct: 23273 atgtttcagcaatatttgtggcaacaacaatctttctaacgttttgtt-cttgtctttga 23331
Query: 507 aatattccttccttgtacat 526
|||| |||||||||||||||
Sbjct: 23332 aata-tccttccttgtacat 23350
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8327
Number of Sequences: 1807
Number of extensions: 8327
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 1007
length of database: 10,358,551
effective HSP length: 16
effective length of query: 991
effective length of database: 10,329,639
effective search space: 10236672249
effective search space used: 10236672249
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)