BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZB11FM1.SCF screened BAC_end
(1013 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1791 1421 0.0
>3x_Contig1791
Length = 39945
Score = 1421 bits (717), Expect = 0.0
Identities = 775/792 (97%), Gaps = 2/792 (0%)
Strand = Plus / Minus
Query: 82 gccaaaactttttgattattggttaaataagaaactctcttcgatggaattggcttcgta 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20232 gccaaaactttttgattattggttaaataagaaactctcttcgatggaattggcttcgta 20173
Query: 142 tcgattatattcacttggatttggttccattaccaaatacaagcttcaagagtttaacgt 201
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 20172 tcgattatattcacttggatttggttccag-accaaatacaagcttcaagagtttaacgt 20114
Query: 202 atatatcaagtcttttgntttgatttgagaccatttctattctttttattataccattga 261
||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 20113 atatatcaagtctttcgttttgatatgagaccatttctattctttttattataccattga 20054
Query: 262 catgatcgattaagtttgatctagtctttgttgataagggtaccgtgtcaaggtatatgt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20053 catgatcgattaagtttgatctagtctttgttgataagggtaccgtgtcaaggtatatgt 19994
Query: 322 taagctgtgagtgtagcgaataccatttcgacatattctgttcatggttacttttcagct 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19993 taagctgtgagtgtagcgaataccatttcgacatattctgttcatggttacttttcagct 19934
Query: 382 ttagtattttatcttctactgatgtccttctttgtaccacaaatgtattacgcagtccgg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19933 ttagtattttatcttctactgatgtccttctttgtaccacaaatgtattacgcagtccgg 19874
Query: 442 cgatttctatttcacatccatcgatgctgccggagaaataaatagagtttttccaggcta 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19873 cgatttctatttcacatccatcgatgctgccggagaaataaatagagtttttccaggcta 19814
Query: 502 atgcctctgttctattcctaaacattatatcacgtttttggctttgattcacaatggata 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19813 atgcctctgttctattcctaaacattatatcacgtttttggctttgattcacaatggata 19754
Query: 562 aaacattggggtcagtattcttgttttccgttaagaataggttgttacaatattccattt 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19753 aaacattggggtcagtattcttgttttccgttaagaataggttgttacaatattccattt 19694
Query: 622 cgtacagcgaagaaagcggttgagataaatcaataatgtaatttgaggtcttagttaatt 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19693 cgtacagcgaagaaagcggttgagataaatcaataatgtaatttgaggtcttagttaatt 19634
Query: 682 catctagttcgatctttggatccagccaggacatgctatcaaagataaataggaaggaag 741
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 19633 catctagttcgatctttggatccagccaggacatgctatcaaagaaaaataggaaggaag 19574
Query: 742 tagtcaatatcgcaaacttagtcttccaatggatctttaccacatttcctacaagagaga 801
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 19573 tagtcaatatcgcaaacttagtcttccaatgattctttaccacatttcctacaagagaga 19514
Query: 802 acttcctcg-accgacttttcattctatttcccccatcttaagtactttcaaatacccct 860
|||| || | || |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 19513 actttcttgtactgactttcatttctatttcccccatcttaagtactttcaaatacccct 19454
Query: 861 tctggagatcag 872
| || |||||||
Sbjct: 19453 tttgaagatcag 19442
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7737
Number of Sequences: 1807
Number of extensions: 7737
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 1013
length of database: 10,358,551
effective HSP length: 16
effective length of query: 997
effective length of database: 10,329,639
effective search space: 10298650083
effective search space used: 10298650083
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)