BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZB11RM1.SCF screened BAC_end
(1010 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig361 1402 0.0
3x_Contig443 145 2e-34
>3x_Contig361
Length = 1383
Score = 1402 bits (707), Expect = 0.0
Identities = 838/870 (96%), Gaps = 9/870 (1%)
Strand = Plus / Plus
Query: 148 catcactgatccgacaacaaacatcgatgtaaaccctccgatccctgcgtctctgaaaca 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 catcactgatccgacaacaaacatcgatgtaaaccctccgatccctgcgtctctgaaaca 60
Query: 208 tggaattgacagttccttttcgacactgaaatctttcacgtctatcgtattccatgcctc 267
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tggaattgacagtaccttttcgacactgaaatctttcacgtctatcgtattccatgcctc 120
Query: 268 tttcaaagacgcacgttcctgctctcgagcagccatactactggactcattattgaattt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttcaaagacgcacgttcctgctctcgagcagccatactactggactcattattgaattt 180
Query: 328 gggttttgtatcctcaaatagaaacttctgtcctttagcataattcgttaattgctgttc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gggttttgtatcctcaaatagaaacttctgtcctttagcataattcgttaattgctgttc 240
Query: 388 ctctgatatactcctttccacctcggtacttgcttcttgcgttttactcttagaaaatgg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctctgatatactcctttccacctcggtacttgcttcttgcgttttactcttagaaaatgg 300
Query: 448 ccacaccatgtttgcgctctgaatattaaaatatcaattcaacgggagtttatattactt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccacaccatgtttgcgctctgaatattaaaatatcaattcaacgggagtttatattactt 360
Query: 508 gacagctacctaggttagcttaatgaagatctcaattgctgcttacttgtcaacgctttt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gacagctacctaggttagcttaatgaagatctcaattgctgcttacttgtcaacgctttt 420
Query: 568 agcatcatctcatcttataatcttagtttgtcaatcagttttcctacagacacaactttt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 agcatcatctcatcttataatcttagtttgtcaatcagttttcctacagacacaactttt 480
Query: 628 tccaaaccgaaaaataattgaaaaatatggaatatttgggaagcgtcagtatttaatcat 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tccaaaccgaaaaataattgaaaaatatggaatatttgggaagcgtcagtatttaatcat 540
Query: 688 aaaatcagaaggtacttggaaattcttgacctaagtgactttttaaacagtgaaactata 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaaatcagaaggtacttggaaattcttgacctaagtgactttttaaacagtgaaactata 600
Query: 748 gcaagtctttgtgaatgcattcctagnttgtctttgacatattaaactgacacaatatgt 807
|||||||| || ||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 601 gcaagtctctggaaatgcattcctagtttgtcttgaacatattaaactgacacaatatgt 660
Query: 808 acatttatttatccgttctata-ttaaaagtcgctttctgcgattcatatgtactgtcgc 866
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 661 acatttatttatccgttctatatttaaaagtcgctttctgcgattcatatgtactgtcgc 720
Query: 867 aggagcaatgaaataaa-gcgactggattcgatactctg-taattagtaaact-atggtg 923
|| || ||||||| ||| ||||| | || |||||||||| ||| |||||| | |||||
Sbjct: 721 agtagaaatgaaaaaaaggcgacagaatccgatactctgaaaatcagtaaaataatggt- 779
Query: 924 aaattg-attaatcttgaacgatgaggtgccacaaaaa-acagtggccggtaagcaattc 981
|||||| |||||||| ||||||||| ||| ||||||| |||||||||| |||||| |||
Sbjct: 780 aaattgaattaatctgaaacgatgagttgcaacaaaaatacagtggccgttaagcatttc 839
Query: 982 -actaggcttttgg-aacactgccctctgg 1009
||||||||| ||| |||||||||||||||
Sbjct: 840 aactaggcttctggaaacactgccctctgg 869
>3x_Contig443
Length = 2290
Score = 145 bits (73), Expect = 2e-34
Identities = 76/77 (98%)
Strand = Plus / Minus
Query: 41 cttcgtctacgacgcatgcgacattgctcccatcctacaatggatccaagtatgaaacct 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 77 cttcgtctacgacgcatgcgacattgctcccatcctacaatggatccaagtatgacacct 18
Query: 101 cctacaccccaatttgc 117
|||||||||||||||||
Sbjct: 17 cctacaccccaatttgc 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7361
Number of Sequences: 1807
Number of extensions: 7361
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 2
length of query: 1010
length of database: 10,358,551
effective HSP length: 16
effective length of query: 994
effective length of database: 10,329,639
effective search space: 10267661166
effective search space used: 10267661166
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)