BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZB12FM1.SCF screened BAC_end
(987 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1426 1336 0.0
>3x_Contig1426
Length = 8319
Score = 1336 bits (674), Expect = 0.0
Identities = 713/724 (98%), Gaps = 2/724 (0%)
Strand = Plus / Plus
Query: 86 tgaatcaattattcaaaccaactgttaaagatcaaattataaactacgaaaaagcagtga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tgaatcaattattcaaaccaactgttaaagatcaaattataaactacgaaaaagcagtga 642
Query: 146 cattttataatttgataggctcattgcctaccaaaagacccatttatctcattttacgtg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 cattttataatttgataggctcattgcctaccaaaagacccatttatctcattttacgtg 702
Query: 206 tctttaatgaggttttgaaaatgcttaagatcctaatggataaatgggagcactatttat 265
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 703 tctttaatgaggttttgaaaaggccaaagatcctaatggataaatgggagcactatttat 762
Query: 266 tcatttttttcatcttggaggtaccttctttaaggcaatgtattaacaacagtactacaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 tcatttttttcatcttggaggtaccttctttaaggcaatgtattaacaacagtactacaa 822
Query: 326 tttctagaacacccaagattaagactttaagttacgaaatattaaaaagatgtattggtt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 tttctagaacacccaagattaagactttaagttacgaaatattaaaaagatgtattggtt 882
Query: 386 acttggggtcaatgaatagtaaagtttcggtgaaatataagaatcacttagttcgtttac 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 acttggggtcaatgaatagtaaagtttcggtgaaatataagaatcacttagttcgtttac 942
Query: 446 atccattgaaatttcaaaagcaatgggaaattttaaacttgtatttgagttatcagttcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 943 atccattgaaatttcaaaagcaatgggaaattttaaacttgtatttgagttatcagttcc 1002
Query: 506 agaaaataggacccggtccgccgcattcaccacgaggattatcaggaacgttgttaactg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1003 agaaaataggacccggtccgccgcattcaccacgaggattatcaggaacgttgttaactg 1062
Query: 566 aatcatcgcctgtggatgaaaccaaagatggaactgtatcttatctnttccaccccggaa 625
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1063 aatcatcgcctgtggatgaaaccaaagatggaactgtatcttatcttttccaccccggaa 1122
Query: 626 ggcaaaagataccgttagagagcaggttcagaattgaanaatacggacttgactggcata 685
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1123 ggcaaaagataccgttagagagcaggttcagaattgaaaaatacggacttgactggcata 1182
Query: 686 ttcgcacggtgtgtcagctaatgaacatatactttcaagctcattgtgaacagccaaaat 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1183 ttcgcacggtgtgtcagctaatgaacatatactttcaagctcattgtgaacagccaaaat 1242
Query: 746 gtgacattctgggtttttttacatatgataattgatttcattgattac-aacgtgatttt 804
|||||| ||| |||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 1243 gtgaca-tctcggttttttacaatatgataattgatttcattgattacaaacgtgatttt 1301
Query: 805 atga 808
||||
Sbjct: 1302 atga 1305
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6824
Number of Sequences: 1807
Number of extensions: 6824
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 987
length of database: 10,358,551
effective HSP length: 16
effective length of query: 971
effective length of database: 10,329,639
effective search space: 10030079469
effective search space used: 10030079469
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)