BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC2ZB12RM1.SCF screened BAC_end (968 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1271 1013 0.0 >3x_Contig1271 Length = 7459 Score = 1013 bits (511), Expect = 0.0 Identities = 621/643 (96%), Gaps = 11/643 (1%) Strand = Plus / Minus Query: 46 cttttagaggaaatccagccgtttgttttgaatgcacaaccaagggaaaaagagatcgtg 105 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 7209 cttttagaggaaatccagccgtttgatttgaatgcacaaccaagggaaaaagagatcgtg 7150 Query: 106 gatactcttggcgagatctattcaataataataacactcgaccatgtagagaaagcattt 165 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7149 gatactcttggcgagatctattcaataataataacactcgaccatgtagagaaagcattt 7090 Query: 166 ttgaaagacgatataggcagtgaagaatacacgcggcttgccaataagctaataaattaa 225 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 7089 ttgaaagacgatataggcagtgaagaatacacgcggcttgccaataagctaataaatcaa 7030 Query: 226 -atggtacatatctcagtgatgaagatgtagaggaacagtttaagagccttgatcatttt 284 | | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7029 tacaggacatatctcagtgatgaagatgtagaggaacagtttaagagccttgatcatttt 6970 Query: 285 aaagcaaaatggcaaattacggcttccaatgcaatcacaaggctggagagaggcattcca 344 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6969 aaagcaaaatggcaaattacggcttccaatgcaatcacaaggctggagagaggcattcca 6910 Query: 345 gtaactgtagaacatggaaccagcggtgacacagattctttggacaattcgagagcggcc 404 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6909 gtaactgtagaacatggaaccagcggtgacacagattctttggacaattcgagagcggcc 6850 Query: 405 gataataccacaaacttaaataaatacagtggaaagcgtgttgcagaggctacaggaaat 464 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6849 gataataccacaaacttaaataaatacagtggaaagcgtgttgcagaggctacaggaaat 6790 Query: 465 ttcatcaccgtaatggacgcattgaaactaaattacaagaccagagaacagcttcatccg 524 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6789 ttcatcaccgtaatggacgcattgaaactaaattacaagaccagagaacagcttcatccg 6730 Query: 525 ttaatggcggagttattgctaagtataaatagggtcaccaagtatgacttcg-aaaccga 583 |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| Sbjct: 6729 ttaatggcggagttattgctaagtataaatagggtcaccagtaatgacttcgaaaaccga 6670 Query: 584 agt-agttagtgg-atggatagtc-aaattaat-aattacccca-gacgagcacctttc- 637 ||| ||||||||| |||||||||| |||| ||| |||||||| | |||||||| ||||| Sbjct: 6669 agtaagttagtggaatggatagtcaaaatcaataaattacccaaggacgagcaactttcg 6610 Query: 638 gatgccgattct-aacagctact-tactca-tagaaagtgcat 677 |||||||||||| |||||||||| |||||| |||||||||||| Sbjct: 6609 gatgccgattctcaacagctactatactcattagaaagtgcat 6567 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7536 Number of Sequences: 1807 Number of extensions: 7536 Number of successful extensions: 43 Number of sequences better than 1.0e-20: 1 length of query: 968 length of database: 10,358,551 effective HSP length: 16 effective length of query: 952 effective length of database: 10,329,639 effective search space: 9833816328 effective search space used: 9833816328 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)