BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC2ZB12RM1.SCF screened BAC_end
         (968 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1271                                                        1013   0.0  

>3x_Contig1271 
          Length = 7459

 Score = 1013 bits (511), Expect = 0.0
 Identities = 621/643 (96%), Gaps = 11/643 (1%)
 Strand = Plus / Minus

                                                                        
Query: 46   cttttagaggaaatccagccgtttgttttgaatgcacaaccaagggaaaaagagatcgtg 105
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 7209 cttttagaggaaatccagccgtttgatttgaatgcacaaccaagggaaaaagagatcgtg 7150

                                                                        
Query: 106  gatactcttggcgagatctattcaataataataacactcgaccatgtagagaaagcattt 165
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7149 gatactcttggcgagatctattcaataataataacactcgaccatgtagagaaagcattt 7090

                                                                        
Query: 166  ttgaaagacgatataggcagtgaagaatacacgcggcttgccaataagctaataaattaa 225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 7089 ttgaaagacgatataggcagtgaagaatacacgcggcttgccaataagctaataaatcaa 7030

                                                                        
Query: 226  -atggtacatatctcagtgatgaagatgtagaggaacagtttaagagccttgatcatttt 284
             |  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7029 tacaggacatatctcagtgatgaagatgtagaggaacagtttaagagccttgatcatttt 6970

                                                                        
Query: 285  aaagcaaaatggcaaattacggcttccaatgcaatcacaaggctggagagaggcattcca 344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6969 aaagcaaaatggcaaattacggcttccaatgcaatcacaaggctggagagaggcattcca 6910

                                                                        
Query: 345  gtaactgtagaacatggaaccagcggtgacacagattctttggacaattcgagagcggcc 404
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6909 gtaactgtagaacatggaaccagcggtgacacagattctttggacaattcgagagcggcc 6850

                                                                        
Query: 405  gataataccacaaacttaaataaatacagtggaaagcgtgttgcagaggctacaggaaat 464
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6849 gataataccacaaacttaaataaatacagtggaaagcgtgttgcagaggctacaggaaat 6790

                                                                        
Query: 465  ttcatcaccgtaatggacgcattgaaactaaattacaagaccagagaacagcttcatccg 524
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6789 ttcatcaccgtaatggacgcattgaaactaaattacaagaccagagaacagcttcatccg 6730

                                                                        
Query: 525  ttaatggcggagttattgctaagtataaatagggtcaccaagtatgacttcg-aaaccga 583
            ||||||||||||||||||||||||||||||||||||||||   ||||||||| |||||||
Sbjct: 6729 ttaatggcggagttattgctaagtataaatagggtcaccagtaatgacttcgaaaaccga 6670

                                                                        
Query: 584  agt-agttagtgg-atggatagtc-aaattaat-aattacccca-gacgagcacctttc- 637
            ||| ||||||||| |||||||||| |||| ||| |||||||| | |||||||| ||||| 
Sbjct: 6669 agtaagttagtggaatggatagtcaaaatcaataaattacccaaggacgagcaactttcg 6610

                                                       
Query: 638  gatgccgattct-aacagctact-tactca-tagaaagtgcat 677
            |||||||||||| |||||||||| |||||| ||||||||||||
Sbjct: 6609 gatgccgattctcaacagctactatactcattagaaagtgcat 6567


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7536
Number of Sequences: 1807
Number of extensions: 7536
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 968
length of database: 10,358,551
effective HSP length: 16
effective length of query: 952
effective length of database: 10,329,639
effective search space: 9833816328
effective search space used: 9833816328
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)