BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC2ZC01RM1.SCF screened BAC_end
         (1023 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1448                                                        1292   0.0  

>3x_Contig1448 
          Length = 10333

 Score = 1292 bits (652), Expect = 0.0
 Identities = 829/863 (96%), Gaps = 19/863 (2%)
 Strand = Plus / Minus

                                                                        
Query: 44   acaagctttatcaattgtatgaacagggtatagtgctttcccgtaagcaaaatcaaaaaa 103
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6109 acaagctttatcaattgtatgaacagggtatagtgctttcccgtaagcaaaatcaaaaaa 6050

                                                                        
Query: 104  tagagcagaacaaaagagaatcaacaaccatagttgacctttactcattctataacaaac 163
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6049 tagagcagaacaaaagagaatcaacaaccatagttgacctttactcattctataacaaac 5990

                                                                        
Query: 164  cacacaactgctgtagcttctaataaaatgagactatcaagacaaatagcagttgttctg 223
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5989 cacacaactgctgtagcttctaataaaatgagactatcaagacaaatagcagttgttctg 5930

                                                                        
Query: 224  ctgaatagcctaaatcgcgccctttgtcgaacaaatataataattagtaatattcttcaa 283
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5929 ctgaatagcctaaatcgcgccctttgtcgaacaaatataataattagtaatattcttcaa 5870

                                                                        
Query: 284  ctttagctttgaatacaaaatggagaagattgatgtaatattaggggaaataagtcatat 343
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5869 ctttagctttgaatacaaaatggagaagattgatgtaatattaggggaaataagtcatat 5810

                                                                        
Query: 344  agctcgtagtactctcgagccgaaacggttcaagttgatgctttatttatgtgacactga 403
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5809 agctcgtagtactctcgagccgaaacggttcaagttgatgctttatttatgtgacactga 5750

                                                                        
Query: 404  cactgacatcaatatcataataacattacccggtcctatgccatgtccatcaacggcttt 463
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5749 cactgacatcaatatcataataacattacccggtcctatgccatgtccatcaacggcttt 5690

                                                                        
Query: 464  gaaaaaaaaatgtttgaaaggggaatttgaataataaagatccattcatgattttaacac 523
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5689 gaaaaaaaaatgtttgaaaggggaatttgaataataaagatccattcatgattttaacac 5630

                                                                        
Query: 524  gttagttgaagaaaacatcgaaggtagagacccaacagagcggaaggaaattagcaatga 583
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5629 gttagttgaagaaaacatcgaaggtagagacccaacagagcggaaggaaattagcaatga 5570

                                                                        
Query: 584  aacttgacatcaatgtatgtgacacattgtgtactagagtaatttgtgaggtgcttttat 643
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5569 aacttgacatcaatgtatgtgacacattgtgtactagagtaatttgtgaggtgcttttat 5510

                                                                        
Query: 644  cac-gag-atcgctg-tggacgtt-gcaa-tgcatatt-agtatctta-gcgtttttct- 695
            ||| ||| ||||||| || ||||| |||| |||||||| ||||||||| |||||||||| 
Sbjct: 5509 cacggagaatcgctgttgaacgttagcaattgcatattaagtatcttaggcgtttttctg 5450

                                                                        
Query: 696  gtattaataca-ttatgttttatgttttgaatcaacagattatattt-tttagcccttat 753
            |||| |||||| |||||||||||||||||| |||||||||||||||| || |||||||||
Sbjct: 5449 gtatcaatacatttatgttttatgttttgattcaacagattatatttcttcagcccttat 5390

                                                                        
Query: 754  -agccactaaaagaaagagc-tttact-acatttttttcatttatggggacctttatttg 810
             ||| ||||||||||||||| |||||| ||||||||||||| ||||| || |||||||||
Sbjct: 5389 cagcaactaaaagaaagagcttttactaacatttttttcatctatggtga-ctttatttg 5331

                                                                        
Query: 811  tcttta-gaaaaa-ctcactgcccaaacttga-aggtttaaggccattgactttcattcc 867
            |||||| |||||| |||| ||||  ||| ||| ||| |||||| |||||||||||| |||
Sbjct: 5330 tctttacgaaaaagctcagtgccagaacctgacagggttaagggcattgactttca-tcc 5272

                                   
Query: 868  tga-gaaccctgnggttttaatt 889
            ||| ||||| || ||||||||||
Sbjct: 5271 tgaggaaccttggggttttaatt 5249


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,193
Number of Sequences: 1807
Number of extensions: 16193
Number of successful extensions: 79
Number of sequences better than 1.0e-20: 1
length of query: 1023
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1007
effective length of database: 10,329,639
effective search space: 10401946473
effective search space used: 10401946473
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)