BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZC02FM1.SCF screened BAC_end
(1036 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1742 1181 0.0
>3x_Contig1742
Length = 17167
Score = 1181 bits (596), Expect = 0.0
Identities = 728/760 (95%), Gaps = 9/760 (1%)
Strand = Plus / Plus
Query: 87 ttaaacacataaacttacaaacaaaatatggcaacagatatcagaacaaacaaggttaag 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11953 ttaaacacataaacttacaaacaaaatatggcaacagatatcagaacaaacaaggttaag 12012
Query: 147 aacgaagagttcaagatctggaagaaaactatcccatccttgtatgagcatatctctaca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12013 aacgaagagttcaagatctggaagaaaactatcccatccttgtatgagcatatctctaca 12072
Query: 207 ttgcaacctaaaatctttatctctttctgaaagtgcccagtcacctgaaaggagagtttt 266
||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||
Sbjct: 12073 ttgcaacctaaaatctttagccctt-ctgaaagtgcccagtcacctgaaaggagagtttt 12131
Query: 267 gttcaccgaacttatctcggaagaggcagataagggtttattgaacacgtctatttacta 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12132 gttcaccgaacttatctcggaagaggcagataagggtttattgaacacgtctatttacta 12191
Query: 327 ttcgcaacggagcgaaatatacgagattggtgtacagctgcctattggagcttatacaag 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12192 ttcgcaacggagcgaaatatacgagattggtgtacagctgcctattggagcttatacaag 12251
Query: 387 tcatgatgataaagagctaccacagcctaggtacagcgaatttttctcagagcctgccaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12252 tcatgatgataaagagctaccacagcctaggtacagcgaatttttctcagagcctgccaa 12311
Query: 447 tgcaaaatgggttttcgagggacagtccattgcgtcattcaaagctaaccattccacatc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12312 tgcaaaatgggttttcgagggacagtccattgcgtcattcaaagctaaccattccacatc 12371
Query: 507 ggctctgattgtaatgagtaaaaagggtacactcgcatggtacaatggctctagttagaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 12372 ggctctgattgtaatgagtaaaaagggtacactcgcatggtacaatggctctagtaagaa 12431
Query: 567 accattgaaaagtttagaaagatcttcagaaaaagatgttacgggctgacttcgataatt 626
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 12432 accattgaaaagtttagaaagatcttcagaaaaagatgttac-ggctgacttcgatattt 12490
Query: 627 caactgatggaaaataagtgggtcagatttcgaatctccggtttcagaatctgcacagag 686
|||||||||||||||| || ||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 12491 caactgatggaaaatatgt-ggtcaga-ttcgaatctccggttccagaatctgcacagag 12548
Query: 687 cggaacgaaaaataccgtcatcaacaatactgtacatatagggtgacgggctacatacca 746
||||||||||| ||||||||||||||||||| ||||| ||||||| |||||||||||
Sbjct: 12549 cggaacgaaaatcaccgtcatcaacaatactgacaatata-ggtgacgtgctacatacca 12607
Query: 747 ttacnattgcccaaata-caaaagggcttggggcgttaaattccccactgcttcattggt 805
|||| |||| ||||||| |||| |||| || |||||||||||| ||||||| ||||| |
Sbjct: 12608 ttac-attg-ccaaataccaaacaggctcggtgcgttaaattccacactgctacattgtt 12665
Query: 806 cagcacagtccactgaggaaaatttgttaaaaatttggga 845
||||||||| ||||||||| ||| |||||| | |||||||
Sbjct: 12666 cagcacagt-cactgaggataatctgttaagattttggga 12704
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6774
Number of Sequences: 1807
Number of extensions: 6774
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 1036
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1020
effective length of database: 10,329,639
effective search space: 10536231780
effective search space used: 10536231780
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)