BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZC02RM1.SCF screened BAC_end
(1000 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1762 1249 0.0
>3x_Contig1762
Length = 22098
Score = 1249 bits (630), Expect = 0.0
Identities = 689/701 (98%), Gaps = 7/701 (0%)
Strand = Plus / Plus
Query: 47 tccttgttcagattactcaaatgtttatcaaccactaacgctaattcaacctcatggtga 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15044 tccttgttcagattactcaaatgtttatcaaccactaacgctaattcaacctcatggtga 15103
Query: 107 atgatagtacccttaggaacataaattggaccagggttgctaccatcctcatttaaacca 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15104 atgatagtacccttaggaacataaattggaccagggttgctaccatcctcatttaaacca 15163
Query: 167 ttgaaggtagcggattcttctggattcaatctggattttgacataggacccactggtatt 226
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 15164 ttgaaggtagcggattcttctggattcaatctggattttgacataggacccactgg-agt 15222
Query: 227 taccaaagatgaggttggcttcaaaaagaagaatggttgcttaggagtggcattgttcaa 286
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15223 caccaaagatgaggttggcttcaaaaagaagaatggttgcttaggagtggcattgttcaa 15282
Query: 287 ttctttaatatgagcagcataattgcggccaatgcaaatgatttttttggccctgtttaa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15283 ttctttaatatgagcagcataattgcggccaatgcaaatgatttttttggccctgtttaa 15342
Query: 347 gtactcgtaggacattttgtaactgtcgatcagtggtttccacagtattggactatttta 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15343 gtactcgtaggacattttgtaactgtcgatcagtggtttccacagtattggactatttta 15402
Query: 407 tgatccaattttacgtcttttattctttccatgcgctgatttaaagatctcaaatgtgac 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15403 tgatccaattttacgtcttttattctttccatgcgctgatttaaagatctcaaatgtgac 15462
Query: 467 ggttgcattttttaattctttatttcaagtatccaaagcggtcagtaatcataaaggttt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15463 ggttgcattttttaattctttatttcaagtatccaaagcggtcagtaatcataaaggttt 15522
Query: 527 atatgtgacggataacgaaagaatgcagatgtggatgttcaagtaacagcgaatgacaac 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15523 atatgtgacggataacgaaagaatgcagatgtggatgttcaagtaacagcgaatgacaac 15582
Query: 587 gtccaatagaa-tatatatagatatggatgctttaataaa-taataggttacagtagaag 644
||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 15583 gtccaatagaattatatatagatatggatgc-ttaataaattaataggttacagtagaag 15641
Query: 645 tataaattagtagtattaagaaccgatttagagtgtatacaggtagcttagttcgtccaa 704
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 15642 tataaattagtagtattaagaaccgattaagagtgtatacaggtagcttagttcgtccaa 15701
Query: 705 aaaccaaa--tagagttgt-agtatcgggtgacttttttaa 742
||| |||| ||||||||| |||||||||||||| ||||||
Sbjct: 15702 aaaacaaaattagagttgtaagtatcgggtgactattttaa 15742
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7893
Number of Sequences: 1807
Number of extensions: 7893
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 1000
length of database: 10,358,551
effective HSP length: 16
effective length of query: 984
effective length of database: 10,329,639
effective search space: 10164364776
effective search space used: 10164364776
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)