BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZC03FM1.SCF screened BAC_end
(1008 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1147 1251 0.0
>3x_Contig1147
Length = 6505
Score = 1251 bits (631), Expect = 0.0
Identities = 716/733 (97%), Gaps = 9/733 (1%)
Strand = Plus / Plus
Query: 88 atgacaccctaattcgaaaatatttggtaataatgcctcagcaagtattgagtgtctttt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2058 atgacaccctaattcgaaaatatttggtaataatgcctcagcaagtattgagtgtctttt 2117
Query: 148 tggcaaagtacaagtgtctaagaaccacgtaaccaaaagggccccattgctattggtggc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2118 tggcaaagtacaagtgtctaagaaccacgtaaccaaaagggccccattgctattggtggc 2177
Query: 208 taaatatttcacaaaaaacacattcatagcactaagtaataagagttgttcttgagtaat 267
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 2178 taaatatttcacaaaaaacacaatcatagcactaagtaataagagttgttcttgagtaat 2237
Query: 268 tatgtcatgggcttccaaacaagctctgactgcacgagctccatatctattttgcacgat 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2238 tatgtcatgggcttccaaacaagctctgactgcacgagctccatatctattttgcacgat 2297
Query: 328 attccagaagttggaaacaatattctcgaagataaagttgttccaagggaaaccaaactt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2298 attccagaagttggaaacaatattctcgaagataaagttgttccaagggaaaccaaactt 2357
Query: 388 caacacacattgaataacgtagttaccaaattgatcgttgaacaatggggtacaatactt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2358 caacacacattgaataacgtagttaccaaattgatcgttgaacaatggggtacaatactt 2417
Query: 448 atagactccgtttgccacatacattttttgtcttggggtatctgcgtttgtaatcatctt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2418 atagactccgtttgccacatacattttttgtcttggggtatctgcgtttgtaatcatctt 2477
Query: 508 ttgacatgcccaagtaccattcttgtgtacacccatcgatgtcaaatatacgcttgtctt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2478 ttgacatgcccaagtaccattcttgtgtacacccatcgatgtcaaatatacgcttgtctt 2537
Query: 568 tcttaacataatatctttaatgacggaagaggcatgttcaaatagtttctgtactatagt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2538 tcttaacataatatctttaatgacggaagaggcatgttcaaatagtttctgtactatagt 2597
Query: 628 attacctaaatagtccgaactcagttctggtatttcatccaacatagctagaactagnct 687
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2598 attacctaaatagtccgaactcagttctggtatttcatccaacatagctagaactagctg 2657
Query: 688 gtcaattt-caaatctgacttttgtccag-atc-atactttttcgtaa-tcacgaagcct 743
||||||| |||||||||| ||||||||| ||| |||||||||||||| |||||||||||
Sbjct: 2658 ttcaatttccaaatctgacatttgtccagaatcaatactttttcgtaattcacgaagcct 2717
Query: 744 t-gggcatcgaact-ccttgtagatangggct-aggtaatggaccgaaa-cagtagtat- 798
| |||||||||||| ||||||||||| ||||| |||||||||||||||| |||||||||
Sbjct: 2718 tggggcatcgaactcccttgtagataagggctcaggtaatggaccgaaatcagtagtatc 2777
Query: 799 acttggtccattg 811
||||| |||||||
Sbjct: 2778 acttgttccattg 2790
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8681
Number of Sequences: 1807
Number of extensions: 8681
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 1008
length of database: 10,358,551
effective HSP length: 16
effective length of query: 992
effective length of database: 10,329,639
effective search space: 10247001888
effective search space used: 10247001888
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)