BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC2ZC03RM1.SCF screened BAC_end
         (997 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1006                                                        1376   0.0  

>3x_Contig1006 
          Length = 5179

 Score = 1376 bits (694), Expect = 0.0
 Identities = 754/765 (98%), Gaps = 7/765 (0%)
 Strand = Plus / Plus

                                                                        
Query: 50   ctttaaatttgaaggaaactgacaatgttgacatagtactcaatgataggaaggaaaaaa 109
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504  ctttaaatttgaaggaaactgacaatgttgacatagtactcaatgataggaaggaaaaaa 563

                                                                        
Query: 110  ttgatgaactacaacggagaattgccacagacaagcgcgtgctaatcaacaggttagaag 169
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564  ttgatgaactacaacggagaattgccacagacaagcgcgtgctaatcaacaggttagaag 623

                                                                        
Query: 170  aaggacaagtaaaactgatacgaaagtttgttgatgaagaaacaaaaaatgtcgaaggta 229
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624  aaggacaagtaaaactgatacgaaagtttgttgatgaagaaacaaaaaatgtcgaaggta 683

                                                                        
Query: 230  atactactgacggtgaggagtctgaagatatagaagcacttttgaaggaattagttctta 289
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684  agactactgacggtgaggagtctgaagatatagaagcacttttgaaggaattagttctta 743

                                                                        
Query: 290  ttcaattaaaacgaaaacgaaaacttaatcaaattattgacgtgataacagacaactcta 349
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744  ttcaattaaaacgaaaacgaaaacttaatcaaattattgacgtgataacagacaactcta 803

                                                                        
Query: 350  aagtttacaaatataggaaaatgatatctcaaggaactgacattgacgtttctgatgttg 409
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804  aagtttacaaatataggaaaatgatatctcaaggaactgacattgacgtttctgatgttg 863

                                                                        
Query: 410  acgaatgtttagatgtgatatatcaaacattaagcaaggaaggttagttgtataattcgt 469
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864  acgaatgtttagatgtgatatatcaaacattaagcaaggaaggttagttgtataattcgt 923

                                                                        
Query: 470  attcgatcgtcatgtacacaatgactactttcttcatgatgtagcattgtattaattaaa 529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924  attcgatcgtcatgtacacaatgactactttcttcatgatgtagcattgtattaattaaa 983

                                                                        
Query: 530  cataagagtactcaacaaaccatgttgaatcatctctacaactcttacccgattatattc 589
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984  cataagagtactcaacaaaccatgttgaatcatctctacaactcttacccgattatattc 1043

                                                                        
Query: 590  attataaatg-gattgtacatatcagtttgttaacttacatatgggctaccataaatata 648
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1044 attataaatgcgattgtacatatcagtttgttaacttacatatgggctaccataaatata 1103

                                                                        
Query: 649  ataatattagagttttagttatctgaaagtctgtaaggtgtaacgctgaagatatcatcc 708
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1104 ataatattagagttttagttatctgaaagtctgtaaggtgtaacgctgaagatatcatcc 1163

                                                                        
Query: 709  gtagttttctg-acacattatncagttatgt-aaaacaaagtaagaacgcgatcttgc-a 765
            ||||||||||| ||||||||| |||| |||| ||||||||| |||||||||||||||| |
Sbjct: 1164 gtagttttctgaacacattatccagtaatgtaaaaacaaagaaagaacgcgatcttgcaa 1223

                                                         
Query: 766  tgttgaaataaa-gtgac-tttattgtctttctg-ggaacttaat 807
            |||||||||||| ||||| ||||||||||||||| ||||||||||
Sbjct: 1224 tgttgaaataaatgtgacttttattgtctttctgtggaacttaat 1268


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8934
Number of Sequences: 1807
Number of extensions: 8934
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 997
length of database: 10,358,551
effective HSP length: 16
effective length of query: 981
effective length of database: 10,329,639
effective search space: 10133375859
effective search space used: 10133375859
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)