BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZC04FM1.SCF screened BAC_end
(1020 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1466 1487 0.0
3x_Contig77 127 5e-29
>3x_Contig1466
Length = 8735
Score = 1487 bits (750), Expect = 0.0
Identities = 846/866 (97%), Gaps = 11/866 (1%)
Strand = Plus / Plus
Query: 86 gctccattggatgactatcaaattcaaacgatcgcatatagaattttccgtctgttggga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5291 gctccattggatgactatcaaattcaaacgatcgcatatagaattttccgtctgttggga 5350
Query: 146 gcaccaaaattacctgaaaacttgtcgtcagttgctgtgaagactcttctagttataatc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5351 gcaccaaaattacctgaaaacttgtcgtcagttgctgtgaagactcttctagttataatc 5410
Query: 206 atgaaatggaatgaatttt-tacgccgtacattcataattcagaagagaattcagtgtcc 264
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 5411 atgaaatggaatgaaaataatacgccgtacattcataattcagaagagaattcagtgtcc 5470
Query: 265 agatattcaaacgcgatagagtttgccattgctagaactggttggataatcagaagtgag 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5471 agatattcaaacgcgatagagtttgccattgctagaactggttggataatcagaagtgag 5530
Query: 325 gataatccaaacgattctcataattcgaaaaaagctgccattcagctggctgcattaacc 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5531 gataatccaaacgattctcataattcgaaaaaagctgccattcagctggctgcattaacc 5590
Query: 385 atgcagattttgagcagcgaaagattgtcagaagaggcagaaaaattcattatgccatta 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5591 atgcagattttgagcagcgaaagattgtcagaagaggcagaaaaattcattatgccatta 5650
Query: 445 tacatgtatgttgaaactaatgttaacagattagacgaagatcaagaggagcttcataac 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5651 tacatgtatgttgaaactaatgttaacagattagacgaagatcaagaggagcttcataac 5710
Query: 505 ttggctcaagagtgcataaaaatcttggagtccaaaatatctgtatcagctttcacatca 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5711 ttggctcaagagtgcataaaaatcttggagtccaaaatatctgtatcagctttcacatca 5770
Query: 565 gcatatgctagtgttaagcagcaggtaattaaaagaagagaagaaagaagagcaaagaga 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5771 gcatatgctagtgttaagcagcaggtaattaaaagaagagaagaaagaagagcaaagaga 5830
Query: 625 gcggttttagctgttagagcgcctgatgtagcagctaatagaaaactaaagaagcatgca 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5831 gcggttttagctgttagagcgcctgatgtagcagctaatagaaaactaaagaagcatgca 5890
Query: 685 agatctagagaaaagagaaagcatgaaaaggatganaacggattctattcagag-aaaaa 743
||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||
Sbjct: 5891 agatctagagaaaagagaaagcatgaaaaggatgaaaacggattcta-tcagagaaaaaa 5949
Query: 744 ccagaaaagaagaattccataattgcattcgggatttattaatcgttaagtagcccgtca 803
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5950 caagaaaagaagaattccataattgcattcgggatttattaatcgttaagtagcccgtca 6009
Query: 804 taa-taaaactttatagagtagtatatttcaattatttaacagtgaatgttaatattaat 862
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6010 taattaaaactttatagagtagtatatttcaattatttaacagtgaatgttaatattaat 6069
Query: 863 gtngaaggnaaggtagatta--tatacanaaga-ggctttct-tgagcatgctcgtaaga 918
|| ||||| ||| ||||||| |||||| |||| ||| |||| |||||||||||||||||
Sbjct: 6070 gttgaagg-aagttagattaattatacaaaagagggcattctatgagcatgctcgtaaga 6128
Query: 919 ta-ttac-cagtgaatgatagcagat 942
|| |||| ||||||||||||||||||
Sbjct: 6129 tagttacacagtgaatgatagcagat 6154
>3x_Contig77
Length = 1038
Score = 127 bits (64), Expect = 5e-29
Identities = 126/147 (85%)
Strand = Plus / Minus
Query: 580 aagcagcaggtaattaaaagaagagaagaaagaagagcaaagagagcggttttagctgtt 639
|||||||||| || |||||||||||||||||||||||||||||||||| | ||| |
Sbjct: 387 aagcagcagggaaggaaaagaagagaagaaagaagagcaaagagagcggggtgagcgggg 328
Query: 640 agagcgcctgatgtagcagctaatagaaaactaaagaagcatgcaagatctagagaaaag 699
|||||||| || | |||||| || ||||||| ||||||||| |||||| | |||||||||
Sbjct: 327 agagcgccggagggagcagcgaagagaaaacgaaagaagcaggcaagagcgagagaaaag 268
Query: 700 agaaagcatgaaaaggatganaacgga 726
|||||||| |||||||| || ||||||
Sbjct: 267 agaaagcaggaaaaggaggaaaacgga 241
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7608
Number of Sequences: 1807
Number of extensions: 7608
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 2
length of query: 1020
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1004
effective length of database: 10,329,639
effective search space: 10370957556
effective search space used: 10370957556
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)