BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZC04RM1.SCF screened BAC_end
(1054 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig374 1685 0.0
>3x_Contig374
Length = 1960
Score = 1685 bits (850), Expect = 0.0
Identities = 965/996 (96%), Gaps = 7/996 (0%)
Strand = Plus / Plus
Query: 52 agtgtaccacacaccttttgggaagagtatcaatatgcgaattttgcttt--aattc-aa 108
||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct: 763 agtgtaccacacaccttttgggaagagtatcaatatgcgaattttgcatttcaattccaa 822
Query: 109 cgggtttggtgtccactgaacgaaagactagtgacattgaatgctataccaaacgaacta 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 cgggtttggtgtccactgaacgaaagactagtgacattgaatgctataccaaacgaacta 882
Query: 169 ctgaataacgaaaagttattcaattgcataggccatgcgatccataaggaatggaagatc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 ctgaataacgaaaagttattcaattgcataggccatgcgatccataaggaatggaagatc 942
Query: 229 aaagatgtgatttttgattttgaagacgtagaccaccatttgcataaacggatcagtctt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 943 aaagatgtgatttttgattttgaagacgtagaccaccatttgcataaacggatcagtctt 1002
Query: 289 ggagaactgaatccgtacgatttcaataaacctttagttaacagagagcataaattacgt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1003 ggagaactgaatccgtacgatttcaataaacctttagttaacagagagcataaattacgt 1062
Query: 349 ttgaagtcacaatctgtcgtaatgacaattgataagttttgtaccgcaaagaccacagca 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1063 ttgaagtcacaatctgtcgtaatgacaattgataagttttgtaccgcaaagaccacagca 1122
Query: 409 ggtagtagtgcgaacagcaaatctatgaatgcgttcatagcacgtaagagccaatcacta 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1123 ggtagtagtgcgaacagcaaatctatgaatgcgttcatagcacgtaagagccaatcacta 1182
Query: 469 aacaacggatcaggcatcatgagtaaattggagacagcactaaagaggagaaaacttagc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1183 aacaacggatcaggcatcatgagtaaattggagacagcactaaagaggagaaaacttagc 1242
Query: 529 ggtcctgccaacgaacactcgacgaagaaagttgtaaatagtcaattcttcgctgctaag 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1243 ggtcctgccaacgaacactcgacgaagaaagttgtaaatagtcaattcttcgctgctaag 1302
Query: 589 cgggaaccaaaagcggtgcctaaagtggagccaaagcctgaaccaggccttgcatattct 648
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1303 ggggaaccaaaagcggtgcctaaagtggagccaaagcctgaaccaggccttgcatattct 1362
Query: 649 gcagctttccactctgacacattttctgatgtgatgttgttagactcggatgaagagtcg 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1363 gcagctttccactctgacacattttctgatgtgatgttgttagactcggatgaagagtcg 1422
Query: 709 gagactcagactggagagcagcagaaaaaagagccgtctcagaaactgagtcaggaagac 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1423 gagactcagactggagagcagcagaaaaaagagccgtctcagaaactgagtcaggaagac 1482
Query: 769 gtcgagacagaagtacccagcagtctggtacccagctctgaaccagactcatcgttcaat 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1483 gtcgagacagaagtacccagcagtctggtacccagctctgaaccagactcatcgttcaat 1542
Query: 829 gaaaaggagaaagaagacgctctgtcaatggcagaagaagaatctgaagtcttgagcgaa 888
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1543 gaaaaggagaagaaggacgctctgtcaatggcagaagaagaatctgaagtcttgagcgaa 1602
Query: 889 gttgaaagaaaagagaaaacangaggaagaagacttttacaaagaaacagggacatcaaa 948
|||||| ||| ||||||||| |||||||||||||| | ||||||||||| ||||||
Sbjct: 1603 gttgaagaaaaggagaaaaca-gaggaagaagacttaca-aaagaaacaggacaatcaaa 1660
Query: 949 tactagcagcatttgaaaacaaattcttgcataccggnagggttaacacgaaatatcgga 1008
||||||||||||| ||||||||||||||||||||| || |||||| |||||| ||
Sbjct: 1661 tactagcagcattgagaaacaaattcttgcataccggagggtttaacagagaatatc-ga 1719
Query: 1009 gacctcgaagaacagaacccaaggaaaaagttccat 1044
||||||||||||||| ||| ||||||| ||||||||
Sbjct: 1720 gacctcgaagaacag-accaaaggaaagagttccat 1754
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7579
Number of Sequences: 1807
Number of extensions: 7579
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 1054
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1038
effective length of database: 10,329,639
effective search space: 10722165282
effective search space used: 10722165282
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)