BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZC05FM1.SCF screened BAC_end
(1027 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1277 1503 0.0
>3x_Contig1277
Length = 5748
Score = 1503 bits (758), Expect = 0.0
Identities = 908/936 (97%), Gaps = 17/936 (1%)
Strand = Plus / Plus
Query: 86 ccaaaattttgaaggagaacggtgccaaggatattcctgtcggggaacccattgcataca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2462 ccaaaattttgaaggagaacggtgccaaggatattcctgtcggggaacccattgcataca 2521
Query: 146 tcgctgatgtggacgatgatttggccactttggagttcccaaagcccgttgaagccaaga 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2522 tcgctgatgtggacgatgatttggccactttggagttcccaaagcccgttgaagccaaga 2581
Query: 206 aagaatcaaagccagttgatattataaaaggaggaggccaaaccagtggaaaaaactgac 265
||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||
Sbjct: 2582 aagaatcaaagccagttgaaacta-aaaaggaggaggccaaaccagtggaaaaaactgac 2640
Query: 266 aagaagaagcaaaccagtgcttcaaaaacaccttctaagaacggcagtgttcaggctaat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2641 aagaagaagcaaaccagtgcttcaaaaacaccttctaagaacggcagtgttcaggctaat 2700
Query: 326 gcatctcaaacattattcccatctgtgctatcactactagaggaaaacaatatttcaact 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2701 gcatctcaaacattattcccatctgtgctatcactactagaggaaaacaatatttcaact 2760
Query: 386 gcagatgcgttggacaaaatcaaggccactggtccaaacggtagaatcttaaaaggtgat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2761 gcagatgcgttggacaaaatcaaggccactggtccaaacggtagaatcttaaaaggtgat 2820
Query: 446 gtgctagcctatttgggtaagatttcccaagattcgttgaacaaggtaaccgagtacatc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2821 gtgctagcctatttgggtaagatttcccaagattcgttgaacaaggtaaccgagtacatc 2880
Query: 506 aaatcccatgagaaattggatctaaccaacatcgaattaagacctgctagagaaactgca 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2881 aaatcccatgagaaattggatctaaccaacatcgaattaagacctgctagagaaactgca 2940
Query: 566 gcagcagcagcagcagcacaagctgctaaacccgctaaaccattacctctagtactaagc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2941 gcagcagcagcagcagcacaagctgctaaacccgctaaaccattacctctagtactaagc 3000
Query: 626 gaacagatcacactccatgtcccagaaaacgtcacttactcccaactatctgctgcgata 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3001 gaacagatcacactccatgtcccagaaaacgtcacttactcccaactatctgctgcgata 3060
Query: 686 gcatcgtacgtcaaggaatgttcattcttggcacacgacgaaccattgaccaatgacgca 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3061 gcatcgtacgtcaaggaatgttcattcttggcacacgacgaaccattgaccaatgacgca 3120
Query: 746 tccgaactatacgacccattattcgaagagttactagtacaagaaccaacanaacctcgt 805
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 3121 tccgaactatacgacccattattcgaagagttactagtacaagaaccaacaaaacctcgt 3180
Query: 806 ttcaagggtcacttat-acatantagacttggaaccctacacc-agacaccgtacctctt 863
||||| |||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct: 3181 ttcaa-ggtcacttataacatagtagacttggaa-cctacaccaagacaccgtacctctt 3238
Query: 864 caccac-accagatatctttggattattatctggtaccac-acgcacg-actatcaac-a 919
|||||| |||||||||||||| |||||||||||||| || ||||| | |||| |||| |
Sbjct: 3239 caccacaaccagatatctttgatttattatctggtacaacaacgcaagaacta-caacaa 3297
Query: 920 ga-gcatccgcagtattcaaac-acaacaaac-cgttacg-attcgcgttgaacgtttcc 975
|| ||||||||||||| ||||| ||||||||| ||| ||| || ||||||||||||||||
Sbjct: 3298 gaggcatccgcagtatccaaacaacaacaaacacgtcacgaatacgcgttgaacgtttcc 3357
Query: 976 g-cgccgttgacgaat-gttaacgga-gccaagcaa 1008
| |||||||||||||| ||||||||| |||||||||
Sbjct: 3358 gtcgccgttgacgaatcgttaacggatgccaagcaa 3393
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6873
Number of Sequences: 1807
Number of extensions: 6873
Number of successful extensions: 310
Number of sequences better than 1.0e-20: 1
length of query: 1027
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1011
effective length of database: 10,329,639
effective search space: 10443265029
effective search space used: 10443265029
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)