BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZC05RM1.SCF screened BAC_end
(1021 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig796 1673 0.0
>3x_Contig796
Length = 2052
Score = 1673 bits (844), Expect = 0.0
Identities = 918/931 (98%), Gaps = 9/931 (0%)
Strand = Plus / Minus
Query: 45 ccagttatcgactttcatgtgtacccttttcagacaagttcaagtggaatttgaatgcat 104
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1664 ccagttatcgactttcatg-gtacccttttcagacaagttcaagtggaatttgaatgcat 1606
Query: 105 tctttaacatgtgaggttcgtgcatgcacttgtgcaacttggcataatgttctgatctgt 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1605 tctttaacatgtgaggttcgtgcatgcacttgtgcaacttggcataatgttctgatctgt 1546
Query: 165 ccaagtagtcagttaagattggttggtaatctggatgagcacagttcttaatgatttctc 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1545 ccaagtagtcagttaagattggttggtaatctggatgagcacagttcttaatgatttctc 1486
Query: 225 ttgctctttctcttggagatagacctcttaagtcagccaaaccttgatcggtgactaaga 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1485 ttgctctttctcttggagatagacctcttaagtcagccaaaccttgatcggtgactaaga 1426
Query: 285 catccaaatcgtgttcagtttgatcgacatgagaagccattgggacaatggtagagatac 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1425 catccaaatcgtgttcagtttgatcgacatgagaagccattgggacaatggtagagatac 1366
Query: 345 cagttgggtcagtctttgtaggtcttgcagctggagcgtgcatgatagacaacttagcgt 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1365 cagttgggtcagtctttgtaggtcttgcagctggagcgtgcatgatagacaacttagcgt 1306
Query: 405 ttctcaagaaatcagcagaaccacccaaaccgttcaacatacgagaaccagagacgttgg 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1305 ttctcaagaaatcagcagaaccacccaaaccgttcaacatacgagaaccagagacgttgg 1246
Query: 465 tggagttagcgtgtgcgtaaatgtcaacttcgacaggggtgttcatagcgataacaccta 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1245 tggagttagcgtgtgcgtaaatgtcaacttcgacaggggtgttcatagcgataacaccta 1186
Query: 525 gacgacggatcaattctgggttgttagaaacaacttgggatcttaaacatagcttctttg 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1185 gacgacggatcaattctgggttgttagaaacaacttgggatcttaaacatagcttctttg 1126
Query: 585 agaaatcatcccagttatcgaaaaacttttggaaaccagcttcggtcaatctgatagagg 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1125 agaaatcatcccagttatcgaaaaacttttggaaaccagcttcggtcaatctgatagagg 1066
Query: 645 tagcagtggcgtaatccaaggcaccgttttcgaacaaatccaagaatgaatcttgcaaga 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1065 tagcagtggcgtaatccaaggcaccgttttcgaacaaatccaagaatgaatcttgcaaga 1006
Query: 705 cttcagtccacacagtcaagttcttgaaggaggagtcagtcaaaccttcaatcacggcgt 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 cttcagtccacacagtcaagttcttgaaggaggagtcagtcaaaccttcaatcacggcgt 946
Query: 765 tagcgatgttaccgataccggattgcattggatgcaagttttcaggtagtctaccatgtc 824
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 945 tagcgatgttaccgataccggattgcaatggatgcaagttttcaggtagtctaccatgtc 886
Query: 825 tcacttcattttcg-agaactcgacc-agtgacgagcgatggattgagatgtagcatcag 882
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 885 tcacttcattttcgaagaactcgaccaagtgacgagcgatggattgagatgtagcatcag 826
Query: 883 atgtagtgtttggacc-acgacatcccttttgagtngattcaa-cacagcaac-acacgt 939
||| |||||||||||| |||||||||| ||||||| ||||||| ||||||||| ||||||
Sbjct: 825 atggagtgtttggaccaacgacatccc-tttgagtagattcaaccacagcaacaacacgt 767
Query: 940 tcagggt-cactgggata-aatcaaaaccgt 968
||||||| |||||||||| |||||| |||||
Sbjct: 766 tcagggtccactgggatagaatcaagaccgt 736
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6452
Number of Sequences: 1807
Number of extensions: 6452
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 1021
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1005
effective length of database: 10,329,639
effective search space: 10381287195
effective search space used: 10381287195
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)