BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZC06FM1.SCF screened BAC_end
(1020 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1720 1715 0.0
>3x_Contig1720
Length = 19870
Score = 1715 bits (865), Expect = 0.0
Identities = 923/939 (98%), Gaps = 3/939 (0%)
Strand = Plus / Minus
Query: 84 gatcttagccttgattaagtcgaacagtgtgacgatatcagcagagaactttctgatacc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5852 gatcttagccttgattaagtcgaacagtgtgacgatatcagcagagaactttctgatacc 5793
Query: 144 ttcagacaacttttcagtggccatagcatcttcgttcaactcgaatctgaatttaggctc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5792 ttcagacaacttttcagtggccatagcatcttcgttcaactcgaatctgaatttaggctc 5733
Query: 204 gtcgttgatgaaagaatctttttcagaaccttcagcctttgcggattcagggtccaagat 263
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 5732 gtcgttgatgaaagaaactctttcagaaccttcagcctttgcggattcagggtccaagat 5673
Query: 264 cttagcaactggttcatcagaggacaacaattcgtccaacaactttggagaaatggtcaa 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5672 cttagcaactggttcatcagaggacaacaattcgtccaacaactttggagaaatggtcaa 5613
Query: 324 gaaatcgacaccggcaagagccttaatttcacccacgtttctgaaggaagcacccataac 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5612 gaaatcgacaccggcaagagccttaatttcacccacgtttctgaaggaagcacccataac 5553
Query: 384 aatggtgttgtaaccatgcttcttgtagtaattgtagatactcttgacagaaatcacacc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5552 aatggtgttgtaaccatgcttcttgtagtaattgtagatactcttgacagaaatcacacc 5493
Query: 444 tggatcagtttcagcagtgtaagtttcaccagtgctggccttgtaccaatccaagattct 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5492 tggatcagtttcagcagtgtaagtttcaccagtgctggccttgtaccaatccaagattct 5433
Query: 504 accaacgaatggagaaatcaaggtaacgttagcttcagcagcagcaacggcttgagcgaa 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5432 accaacgaatggagaaatcaaggtaacgttagcttcagcagcagcaacggcttgagcgaa 5373
Query: 564 agagaacaacaaagtcaagttgacgtggatatcgtgttccttttctagttcttgagcagc 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5372 agagaacaacaaagtcaagttgacgtggatatcgtgttccttttctagttcttgagcagc 5313
Query: 624 ttggataccttcccaagtggaagcaatcttgatcaagactctgtccttggaaataccttc 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5312 ttggataccttcccaagtggaagcaatcttgatcaagactctgtccttggaaataccttc 5253
Query: 684 tgcttcatacaacttgatgatttccaaagccttcttaacggtagcatccttgtcgaagga 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5252 tgcttcatacaacttgatgatttccaaagccttcttaacggtagcatccttgtcgaagga 5193
Query: 744 caatctagcatcgacttcagtagaaactctacctggaacgaccttcnagatagcagtacc 803
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 5192 caatctagcatcgacttcagtagaaactctacctggaacgaccttcaagatagcagtacc 5133
Query: 804 gaattcgaccaatagcttgtcaacagcattttcaacttgctcgtcaatgttttgaccttg 863
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 5132 gaattcgaccaatagcttgtcaacagcaatttcaacttgctcgtcaatgttttgaccttg 5073
Query: 864 cttcttaccgtattgtacagcagagtcgatcacctta-cgtaggcttgttgcttggcagc 922
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 5072 cttcttaccgtattgtacagcagagtcgatcaacttagcgtaggcttgttgcttggcagc 5013
Query: 923 ggccaagatcaaggatgggttggtagaancatcttgtggagtggactttagc-atagatt 981
|||||||||||| ||||||||||||| | |||||||||||||| || ||||| |||||||
Sbjct: 5012 ggccaagatcaaagatgggttggtagtagcatcttgtggagtgaac-ttagcaatagatt 4954
Query: 982 ccaaatcaccagtgtcgggcaccacagtggtaccggtgg 1020
| |||||||||||||||| || ||||||||||||||||
Sbjct: 4953 cgaaatcaccagtgtcggcaacgacagtggtaccggtgg 4915
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6933
Number of Sequences: 1807
Number of extensions: 6933
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 1020
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1004
effective length of database: 10,329,639
effective search space: 10370957556
effective search space used: 10370957556
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)