BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZC06RM1.SCF screened BAC_end
(1023 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1766 1826 0.0
>3x_Contig1766
Length = 23951
Score = 1826 bits (921), Expect = 0.0
Identities = 962/969 (99%), Gaps = 5/969 (0%)
Strand = Plus / Plus
Query: 51 cccattcgtttaaccgccgagcacgcaaaacccaagcaaaacttaagaaaaaccaggcag 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 cccattcgtttaaccgccgagcacgcaaaacccaagcaaaacttaagaaaaaccaggcag 184
Query: 111 agcacaggcatagcttctctccactgcttctcccctagtcatcttttctgcttcctataa 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 agcacaggcatagcttctctccactgcttctcccctagtcatcttttctgcttcctataa 244
Query: 171 ttcttatttttttctccacaaatattctcttctcaaaaaaaaaaaaactggatggatgga 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ttcttatttttttctccacaaatattctcttctcaaaaaaaaaaaaactggatggatgga 304
Query: 231 tgacccggtgcgaccggctggatccacattgatttcccctcacaaccgcactgcaaaacg 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tgacccggtgcgaccggctggatccacattgatttcccctcacaaccgcactgcaaaacg 364
Query: 291 cgttaaacgcggcagttctccaaaattggagcaatcgaaaaagaaggggaaaatcccaga 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 cgttaaacgcggcagttctccaaaattggagcaatcgaaaaagaaggggaaaatcccaga 424
Query: 351 catgtcaaatgaaatcgtctcgtataagctctgggccgcttcttgacaggctatgctaca 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 catgtcaaatgaaatcgtctcgtataagctctgggccgcttcttgacaggctatgctaca 484
Query: 411 cgtaaacgggaactgactagaaaggctggaacaatagaagagagacacttggacaaaatt 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgtaaacgggaactgactagaaaggctggaacaatagaagagagacacttggacaaaatt 544
Query: 471 aagggttcaattctcaacatgatacgatactcagagatcatcttcatctttaatcgctac 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 aagggttcaattctcaacatgatacgatactcagagatcatcttcatctttaatcgctac 604
Query: 531 tccgtatctattccgtatccactccgttagtgactccgtagcctctccattatctggttt 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tccgtatctattccgtatccactccgttagtgactccgtagcctctccattatctggttt 664
Query: 591 cccattttactctttgtttcctctctcgatggcaattacaagatagctaattactatcac 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cccattttactctttgtttcctctctcgatggcaattacaagatagctaattactatcac 724
Query: 651 atctctgagttctcaacagaaacaggaaaaaaataatgacccattcttttcttaattgat 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 atctctgagttctcaacagaaacaggaaaaaaataatgacccattcttttcttaattgat 784
Query: 711 acatgttttcgattactttctaagcgaatgaatgaatgatcatcgttcttatttatccat 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 acatgttttcgattactttctaagcgaatgaatgaatgatcatcgttcttatttatccat 844
Query: 771 attgtaattagtgaggggaaaacaatgatttgacttgatggaatagtatttaaatagaca 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 attgtaattagtgaggggaaaacaatgatttgacttgatggaatagtatttaaatagaca 904
Query: 831 agagttttgtaactgttggacatcatgtgagtttgaagtatggtgtatttatataataat 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 agagttttgtaactgttggacatcatgtgagtttgaagtatggtgtatttatataataat 964
Query: 891 tatgtttatatgttagttgttggctaatactagtaatcaaacac-attatcttacagggt 949
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 965 tatgtttatatgttagttgttggctaatactagtaatcaaacacaattatctaacagggt 1024
Query: 950 gaccaga-gtagtagtgatat-aaaatccatattttgtgccaaa-gtcttctgctgttga 1006
|| |||| ||||||||||||| |||||||||||||||||||||| |||| ||||||||||
Sbjct: 1025 ga-cagaggtagtagtgatataaaaatccatattttgtgccaaatgtctcctgctgttga 1083
Query: 1007 taccgcttc 1015
|||||||||
Sbjct: 1084 taccgcttc 1092
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,177
Number of Sequences: 1807
Number of extensions: 15177
Number of successful extensions: 158
Number of sequences better than 1.0e-20: 1
length of query: 1023
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1007
effective length of database: 10,329,639
effective search space: 10401946473
effective search space used: 10401946473
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)