BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZC07FM1.SCF screened BAC_end
(1040 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1477 1419 0.0
>3x_Contig1477
Length = 9322
Score = 1419 bits (716), Expect = 0.0
Identities = 766/780 (98%), Gaps = 2/780 (0%)
Strand = Plus / Minus
Query: 87 tactacgttcctgacgaacagtgtaccttagagaccttcgatgcagagctttggggtaga 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8555 tactacgttcctgacgaacagtgtaccttagagaccttcgatgcagagctttggggtaga 8496
Query: 147 tatttcaaacttgtcttgtgtattgctaaccataagactgttaactctactcctctagca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8495 tatttcaaacttgtcttgtgtattgctaaccataagactgttaactctactcctctagca 8436
Query: 207 cctttgccgaggaaagctgtgtatttggtgaccggagacttgattggccgagcatcgtac 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8435 cctttgccgaggaaagctgtgtatttggtgaccggagacttgattggccgagcatcgtac 8376
Query: 267 atactcgagcaaatctgggacattttgggtgacaattgtattggtaccgatcttgataat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8375 atactcgagcaaatctgggacattttgggtgacaattgtattggtaccgatcttgataat 8316
Query: 327 aagtatggtattctaagatcttcggtgtatcaaatgacatttttgactgcagctatggat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8315 aagtatggtattctaagatcttcggtgtatcaaatgacatttttgactgcagctatggat 8256
Query: 387 atagttacagacttctgtgcgttttcattcttacgtcatgtagatgcaagaagggtaggt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8255 atagttacagacttctgtgcgttttcattcttacgtcatgtagatgcaagaagggtaggt 8196
Query: 447 agtaaaatcatttgggttgtactaattttggtttggacgaacgaaaattcattaaccaca 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8195 agtaaaatcatttgggttgtactaattttggtttggacgaacgaaaattcattaaccaca 8136
Query: 507 gctattgaagagctaactcctcaatttttcaatgcataccagaagggtgcattgagacca 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8135 gctattgaagagctaactcctcaatttttcaatgcataccagaagggtgcattgagacca 8076
Query: 567 accgtattcgaagtggagatatttttggacactttgttgcatgttattcatctcgatacc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8075 accgtattcgaagtggagatatttttggacactttgttgcatgttattcatctcgatacc 8016
Query: 627 gaggacagcattaaagacactcttttcaattatgttcgtttcttgaaggagtttctactc 686
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8015 gaggacagcattaaggacactcttttcaattatgttcgtttcttgaaggagtttctactc 7956
Query: 687 tcggtgggctgaaacagaggatattccatccggtgaagaatttgatgatgacagacctgc 746
|| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 7955 tc-gttggctgaaacagaggatattccatccggtgaagaatttgatgatgacagaactgc 7897
Query: 747 cagcccattacaaatctttggctacctaatgtccatgaagagacctgtaatgttccccac 806
||||| ||||| ||||||||||||||||||||||||||||||||||| |||||| | |||
Sbjct: 7896 cagccaattacgaatctttggctacctaatgtccatgaagagacctgaaatgttgcacac 7837
Query: 807 cttgggtaatgacttatttatt-attacatgagaagggaggattacttacaagccgcatt 865
||||| |||||||||||||||| || ||||||||||| |||||||| |||||||||||||
Sbjct: 7836 cttggttaatgacttatttattaatcacatgagaaggaaggattacatacaagccgcatt 7777
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6320
Number of Sequences: 1807
Number of extensions: 6320
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 1040
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1024
effective length of database: 10,329,639
effective search space: 10577550336
effective search space used: 10577550336
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)