BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZC07RM1.SCF screened BAC_end
(1024 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1543 1404 0.0
>3x_Contig1543
Length = 9648
Score = 1404 bits (708), Expect = 0.0
Identities = 743/751 (98%), Gaps = 3/751 (0%)
Strand = Plus / Plus
Query: 49 tgtatattagattcaatgccaattcaatcctcttattaaacaaagcgtgctttttttgaa 108
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 451 tgtatattagattcaatgccaatgcaatcctcttattaaacaaagcgtgctttttttgaa 510
Query: 109 aagactttgaggatacttctccttcattcggtacgcatcgtatttgtagtgcatcaatcc 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 aagactttgaggatacttctccttcattcggtacgcatcgtatttgtagtgcatcaatcc 570
Query: 169 ataacttaaccttgaggatatttaattggctgacttccgtgagacaactcaactgcttta 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ataacttaaccttgaggatatttaattggctgacttccgtgagacaactcaactgcttta 630
Query: 229 agaaacattcgtaatcatcatctgttccatgaacattcgttacatcaatagtaccacttt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 agaaacattcgtaatcatcatctgttccatgaacattcgttacatcaatagtaccacttt 690
Query: 289 tcgcaagacttt-cattatccagacaattttcatcatcagcttcaatcgttttagatagt 347
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tcgcaagacttttcattatccagacaattttcatcatcagcttcaatcgttttagatagt 750
Query: 348 acagctcggagctcggtgacttgggacctttcctttaagacttgagaacaaatatcgatc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 acagctcggagctcggtgacttgggacctttcctttaagacttgagaacaaatatcgatc 810
Query: 408 aatttagtgttccagaaatctggagtcgcaatccttgaaacgagtggctgaagaaccgaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 aatttagtgttccagaaatctggagtcgcaatccttgaaacgagtggctgaagaaccgaa 870
Query: 468 cacgccacaacttctcttagaattgtcctgacaaaaggtgattctaactccttgggatca 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 cacgccacaacttctcttagaattgtcctgacaaaaggtgattctaactccttgggatca 930
Query: 528 acaagaatcgatagcaactctttagctcttttccgggaataattttgtacatcctcagaa 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 acaagaatcgatagcaactctttagctcttttccgggaataattttgtacatcctcagaa 990
Query: 588 agactttcctgactcanagtgagagatagatccttatggatacggtactgcttattgaat 647
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 991 agactttcctgactcaaagtgagagatagatccttatggatacggtactgcttattgaat 1050
Query: 648 tccactgctacagctaaatccacattttgttcaggtttgtctatagcaacgctacttgtg 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1051 tccactgctacagctaaatccacattttgttcaggtttgtctatagcaacgctacttgtg 1110
Query: 708 atgctctcttgaga-atataaaaggtagtgtaatgtttcgtcaataaa-gtagtattctt 765
|||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 1111 atgctctcttgagatatatagaaggtagtgtaatgtttcgtcaataaaggtagtattctt 1170
Query: 766 acaatcattaactcacaaaggtcaacatctg 796
| |||||| ||||||||||||||||||||||
Sbjct: 1171 aaaatcatcaactcacaaaggtcaacatctg 1201
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7836
Number of Sequences: 1807
Number of extensions: 7836
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 1024
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1008
effective length of database: 10,329,639
effective search space: 10412276112
effective search space used: 10412276112
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)