BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZC08FM1.SCF screened BAC_end
(1057 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1281 1402 0.0
>3x_Contig1281
Length = 7825
Score = 1402 bits (707), Expect = 0.0
Identities = 755/769 (98%), Gaps = 2/769 (0%)
Strand = Plus / Minus
Query: 85 taacatattgtgaagaatgactggttgcagattttgggagagatgccaatagctgcaaca 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1468 taacatattgtgaagaatgactggttgcagattttgggagagatgccaatagctgcaaca 1409
Query: 145 tattttcgctcaaaatcttacttatcacagcttgaacatctgcctcccatgattggtcga 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1408 tattttcgctcaaaatcttacttatcacagcttgaacatctgcctcccatgattggtcga 1349
Query: 205 gagataataaaaactccaagtattccgtgaacaatagcatacccgcatggaccactggcc 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1348 gagataataaaaactccaagtattccgtgaacaatagcatacccgcatggaccactggcc 1289
Query: 265 aattcttttgttcataactctctctcaaatattttgtaaagagaatgtaacactcatcta 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1288 aattcttttgttcataactctctctcaaatattttgtaaagagaatgtaacactcatcta 1229
Query: 325 acaatgcgcctgagacataatccggtgtagcatcaatttcataaatgcaccgtgatctct 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1228 acaatgcgcctgagacataatccggtgtagcatcaatttcataaatgcaccgtgatctct 1169
Query: 385 ggaatttcacaaaccacgaaatgaataacatgtattcaatcttatgcaatggtaattgat 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1168 ggaatttcacaaaccacgaaatgaataacatgtattcaatcttatgcaatggtaattgat 1109
Query: 445 cttgaatttcactcgtaaaactatctgtggcattttgcaataacaaattgaaactggaat 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1108 cttgaatttcactcgtaaaactatctgtggcattttgcaataacaaattgaaactggaat 1049
Query: 505 caacaaaatctgccaaaaactcttttatgctagtaatgttgtcagaagacatgtaaatag 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1048 caacaaaatctgccaaaaactcttttatgctagtaatgttgtcagaagacatgtaaatag 989
Query: 565 aattaccttcagtactaaaaaagctgctactgagtccttcaataacatcgagtctcatag 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 aattaccttcagtactaaaaaagctgctactgagtccttcaataacatcgagtctcatag 929
Query: 625 tgatggttttattccatttttttcttgagtctaactcttgntatgccgcatcatcacgca 684
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 928 tgatggttttattccatttttttcttgagtctaactcttgtaatgccgcatcatcacgca 869
Query: 685 tgttgacagaattactagcaattgtcaatcgcgtattttgaggtgtctgtatagacaata 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 tgttgacagaattactagcaattgtcaatcgcgtattttgaggtgtctgtatagacaata 809
Query: 745 aacccgccaatctagaatgacaagaagaagtattctttattacattaagcttcttttcat 804
|||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 808 aaccgccaaatctagaatgacgagaagaagtattctttattacattaagcttcttttcat 749
Query: 805 gttccttttgcaagtaaatcttgagagtgtttaccttgacgtngtcatg 853
||||| ||||||||||| ||| | ||||||||| |||||| ||||||
Sbjct: 748 gttcc-tttgcaagtaattctgaaaggtgtttacc-tgacgttgtcatg 702
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8335
Number of Sequences: 1807
Number of extensions: 8335
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 1057
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1041
effective length of database: 10,329,639
effective search space: 10753154199
effective search space used: 10753154199
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)