BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZC08RM1.SCF screened BAC_end
(1015 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1122 1126 0.0
>3x_Contig1122
Length = 4483
Score = 1126 bits (568), Expect = 0.0
Identities = 666/690 (96%), Gaps = 7/690 (1%)
Strand = Plus / Plus
Query: 209 cagtatcttactatgagcagcttccttgattcttttcgcgatttctctcggaggtaaaaa 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17 cagtatcttactatgagcagcttccttgattcttttcgcgatttctctcggaggtaaaaa 76
Query: 269 gtttggatggtcccagccatattctttagagttcaagcctccactacagacatcaataac 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 gtttggatggtcccagccatattctttagagttcaagcctccactacagacatcaataac 136
Query: 329 atctaccccatgctgtactaaaaatggtaataaccgaatggtgtcattgagtttccaccc 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 atctaccccatgctgtactaaaaatggtaataaccgaatggtgtcattgagtttccaccc 196
Query: 389 gtctgggtcttcaacgttttcatctgcacaaagtctcaagaaaattggcatagagtcagg 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gtctgggtcttcaacgttttcatctgcacaaagtctcaagaaaattggcatagagtcagg 256
Query: 449 aatcgacgacctcacctcatctattacctctagtagaaatttgattctattttcaaaagg 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aatcgacgacctcacctcatctattacctctagtagaaatttgattctattttcaaaagg 316
Query: 509 gccaccatacctatcattcctcttattcgctgtggctgtgtaaaattgacaaggtaaata 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gccaccatacctatcattcctcttattcgctgtggctgtgtaaaattgacaaggtaaata 376
Query: 569 tccataaccagcatgaatttcaacaaaatcgtaccctgctttctcgacagcgagcttggc 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tccataaccagcatgaatttcaacaaaatcgtaccctgctttctcgacagcgagcttggc 436
Query: 629 actaataccgtattggtttatagttttctcaatttgagcaagcgtcagttcatttggaat 688
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 actaataccgtattgttttatagttttctcaatttgagcaagcgtcagttcatttggaat 496
Query: 689 tacaccagaatcatcgaagggtactgtagagggagccacnttattattcagccatccacc 748
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 497 tacaccagaatcatcgaagggtactgtagagggagccactaatttatcaagccatccacc 556
Query: 749 tttcctcatttggggacgtaacgcnctagtttcgcatttagaggagatgccagacttgct 808
|||||||||| ||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 557 -ttcctcattt-gggacgtaaacgcctagttcgccatttagaggagatgccagacttgct 614
Query: 809 ttacggccagcatgacccatttggacaccaatttt-atattttg-acatgag-ccaatct 865
||||||||||||||||||| ||||||||||||||| ||||| || ||||||| |||||||
Sbjct: 615 ttacggccagcatgacccaattggacaccaattttaatattatgaacatgagcccaatct 674
Query: 866 ac-atattttcttt-tgagtgagggcttgt 893
|| ||||||||||| ||||||| |||||||
Sbjct: 675 acaatattttctttatgagtgatggcttgt 704
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6351
Number of Sequences: 1807
Number of extensions: 6351
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 1015
length of database: 10,358,551
effective HSP length: 16
effective length of query: 999
effective length of database: 10,329,639
effective search space: 10319309361
effective search space used: 10319309361
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)