BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZC09FM1.SCF screened BAC_end
(1036 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1505 1558 0.0
>3x_Contig1505
Length = 10303
Score = 1558 bits (786), Expect = 0.0
Identities = 838/849 (98%), Gaps = 5/849 (0%)
Strand = Plus / Minus
Query: 88 tggaaaagtccaaagacttatctatttatgtactgggtttgctcgcatgtgtcattttaa 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1056 tggaaaagtccaaagacttatctatttatgtactgggtttgctcgcatgtgtcattttaa 997
Query: 148 ggaaaacgaaaaaaggttagaatttctcagaggtgacgaacacttgtaccagtacgttac 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996 ggaaaacgaaaaaaggttagaatttctcagaggtgacgaacacttgtaccagtacgttac 937
Query: 208 aaagtgccttcttacgttcacaaataagaaactagccactcctctgagaaaaattgcgat 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 aaagtgccttcttacgttcacaaataagaaactagccactcctctgagaaaaattgcgat 877
Query: 268 caagaacctagtgaaattggcgtcatcttttcccaaactcttcaactctccacctgttct 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 caagaacctagtgaaattggcgtcatcttttcccaaactcttcaactctccacctgttct 817
Query: 328 aaaagttttagatcatgagttcgaagctggtgtcctagacactaaactgacaatcattga 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 aaaagttttagatcatgagttcgaagctggtgtcctagacactaaactgacaatcattga 757
Query: 388 ctgtttacaagtgttcttctctagtgaggaaaagaaagtattaatgaaaataggggcgaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 ctgtttacaagtgttcttctctagtgaggaaaagaaagtattaatgaaaataggggcgaa 697
Query: 448 cggtaccatatcatcaagttcagagatgaggagattgatatcaacacaaaacactaccga 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 cggtaccatatcatcaagttcagagatgaggagattgatatcaacacaaaacactaccga 637
Query: 508 gtctgtcaatgatggcgtctgttcagcattagttaccagataccttgacagcatcatgga 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 gtctgtcaatgatggcgtctgttcagcattagttaccagataccttgacagcatcatgga 577
Query: 568 tttatgtttgctatcggatataaaagatgctattgttgccatcaaatttctacagctcac 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tttatgtttgctatcggatataaaagatgctattgttgccatcaaatttctacagctcac 517
Query: 628 attgaattttcactataccaatccgtcacatgctgttcctacacttattgctctttcatg 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 attgaattttcactataccaatccgtcacatgctgttcctacacttattgctctttcatg 457
Query: 688 ttcagacgcgaactcagtaaaaacagtgtcgaccagactgttgttcacgatttttgaaca 747
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 456 ttcagacgcgaactcagtaaaaacagtgtcgaccagactgttgtccacgatttttgaaca 397
Query: 748 gtatgagagtatggtatttaacggttcttgccgctggattt-aaaagtgctgtgttgttt 806
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 396 gtatgagagtatggtatttaacgg-tcttgccgctggatttaaaaagtgctgtgttgttt 338
Query: 807 tc-agagcctgctcccatcagagttggagcgcaaagatcactgcatgaaacgcctacagt 865
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tcaagagcctgctcccatcagagttggagcgcaaagatcactgcatgaaacgcctacagt 278
Query: 866 gcatattattccac-acaaaaaaaac-gccaaaaatacgtaagtgttgncaaaaatctta 923
||||||||| | || ||||||||||| || |||||||||||||||||| |||||||||||
Sbjct: 277 gcatattatccaacaacaaaaaaaacggcaaaaaatacgtaagtgttgtcaaaaatctta 218
Query: 924 ctttatcag 932
|| ||||||
Sbjct: 217 ctatatcag 209
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6595
Number of Sequences: 1807
Number of extensions: 6595
Number of successful extensions: 29
Number of sequences better than 1.0e-20: 1
length of query: 1036
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1020
effective length of database: 10,329,639
effective search space: 10536231780
effective search space used: 10536231780
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)