BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZC09RM1.SCF screened BAC_end
(1022 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1755 1624 0.0
>3x_Contig1755
Length = 22936
Score = 1624 bits (819), Expect = 0.0
Identities = 891/909 (98%), Gaps = 8/909 (0%)
Strand = Plus / Minus
Query: 40 cttccanactttagcaggggtaaaccaatagttctaaagatggaccttgataaacaattt 99
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1921 cttccagactttagcaggggtaaaccaatagttctaaagatggaccttgataaacaattt 1862
Query: 100 cccttagttcaaataaatgccataattacaaatttatcatccgtattgtccttatttgac 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1861 cccttagttcaaataaatgccataattacaaatttatcatccgtattgtccttatttgac 1802
Query: 160 gaattacagcaactttccgaattacacgatatgaaacttgatgatattcatacttttcac 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1801 gaattacagcaactttccgaattacacgatatgaaacttgatgatattcatacttttcac 1742
Query: 220 aataaaattgggaaaatattggagttacttacacaatctattacattattacaaaatcct 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1741 aataaaattgggaaaatattggagttacttacacaatctattacattattacaaaatcct 1682
Query: 280 ccacgagaattggtctttccgcataataacaacagcttcttaaacgacaacttctctgaa 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1681 ccacgagaattggtctttccgcataataacaacagcttcttaaacgacaacttctctgaa 1622
Query: 340 tctcatgacatttgtgaatcagcacatcatttggtcaatatggaattagtgctattcaaa 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1621 tctcatgacatttgtgaatcagcacatcatttggtcaatatggaattagtgctattcaaa 1562
Query: 400 aacgagatttgcttggacattaggaatttgacaaaagtcattaaaaaaccctggagtgag 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1561 aacgagatttgcttggacattaggaatttgacaaaagtcattaaaaaaccctggagtgag 1502
Query: 460 atcgattcgaaaactgggttatcattcagtgataaagtcagagacaggctgaagcaagac 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1501 atcgattcgaaaactgggttatcattcagtgataaagtcagagacaggctgaagcaagac 1442
Query: 520 agaaatggaaaaatcgcagagatccttaaggaagaaggcttgcaagttgaacaaacatct 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 agaaatggaaaaatcgcagagatccttaaggaagaaggcttgcaagttgaacaaacatct 1382
Query: 580 atgataaacaatttgatatccagtttttcagcaactgaaagaatcactcttccgcaagca 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 atgataaacaatttgatatccagtttttcagcaactgaaagaatcactcttccgcaagca 1322
Query: 640 agcgatctattggctaggtgtgtgacatttaacgggcgagttgtcactgaatgcgagaaa 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 agcgatctattggctaggtgtgtgacatttaacgggcgagttgtcactgaatgcgagaaa 1262
Query: 700 g-ttcaattaccaccagcgatcctacattgattagtgtcagtgcaaagttgaacggggct 758
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1261 gtttcaattaccaccagcgatcctacattgattagtgtcagtgcaaagttgaac-gggct 1203
Query: 759 tgaaa--caaatcagcattcactttgtaaata-tcaaaatttaagt--acaatgcgatag 813
||||| ||||||||| |||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 1202 tgaaaacaaaatcagcaatcactttgtaaatattcaaaatttaagttaacaatgcgatag 1143
Query: 814 atagagagtccgcgtatgcttatttatctctcttcatgcanntcctgnattctttgtatc 873
|||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 1142 atagagagtcggcgtatgcttatttatctctcttcatgcaattcctgtattctttgtatc 1083
Query: 874 agttccttcttacgattctttaagtctttgagacgttccaattcttcatgtgtcga-gat 932
||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1082 agttcttctttacgattctttaagtctttgagacgttccaattcttcatgtgtcgaggat 1023
Query: 933 actattaca 941
|||||||||
Sbjct: 1022 actattaca 1014
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7581
Number of Sequences: 1807
Number of extensions: 7581
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 1022
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1006
effective length of database: 10,329,639
effective search space: 10391616834
effective search space used: 10391616834
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)