BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZC10FM1.SCF screened BAC_end
(987 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1220 809 0.0
>3x_Contig1220
Length = 4729
Score = 809 bits (408), Expect = 0.0
Identities = 446/455 (98%), Gaps = 3/455 (0%)
Strand = Plus / Plus
Query: 86 gtggttcggtggtggtgctgatttaactccttcttatttgtacgaggaagacgctaaatt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4267 gtggttcggtggtggtgctgatttaactccttcttatttgtacgaggaagacgctaaatt 4326
Query: 146 gttccatcaattgcacaaggatgctttggacaaaacggacgttgccttgtacccaaaata 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4327 gttccatcaattgcacaaggatgctttggacaaaacggacgttgccttgtacccaaaata 4386
Query: 206 caagaaatggtgcgatgattatttctatatcaaacacagagaagaaaccagaggtatcgg 265
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 4387 caagaaatggtgcgatgagtatttctatatcaaacacagagaagaaaccagaggtatcgg 4446
Query: 266 tggtattttctttgatgatgtcgatgatcgtgatccaaacgaaatcttgcaaatggttga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4447 tggtattttctttgatgatgtcgatgatcgtgatccaaacgaaatcttgcaaatggttga 4506
Query: 326 aaactgttttgatgccttcttgccatcttacctcgaaatcatcaaaagaagagaggatat 385
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 4507 aaactgttttgatgccttcttgccatcttacctcgaaatcatcaaaagaagaaaggatat 4566
Query: 386 gccttacactgaagaagaaagacaatggcaacaaattagacgtggcagatacgttgaatt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4567 gccttacactgaagaagaaagacaatggcaacaaattagacgtggcagatacgttgaatt 4626
Query: 446 caacctagtccttgacagaggtactcaattcggttttaagaactccaggatcccgtgtcc 505
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 4627 caacctagtccttgacagaggtactcaattcgg-nttaagaactccaggatcccgtgtcg 4685
Query: 506 gaagtatttttgatgtccttggcctgtgactgctt 540
||||| ||||||||| ||| ||||||||||||||
Sbjct: 4686 aaagta-ttttgatgt-ctttgcctgtgactgctt 4718
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,261
Number of Sequences: 1807
Number of extensions: 22261
Number of successful extensions: 304
Number of sequences better than 1.0e-20: 1
length of query: 987
length of database: 10,358,551
effective HSP length: 16
effective length of query: 971
effective length of database: 10,329,639
effective search space: 10030079469
effective search space used: 10030079469
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)